| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0232 |
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| Symbol | |
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| ID | 6962443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 255229 |
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| End bp | 257208 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643381541 |
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| Product | putative alpha amylase |
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| Protein accession | YP_002264583 |
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| Protein GI | 209809045 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTGTTTA TCCAGAGGTA CATTGTGATT ACCAACCAAG CTTTCCCTTA CCCTTTAGGT
GCAAACCTAA AAGCACACGG ATGTAATTTT TCAGTTCACT ATGCTTCTGA TTATCCATTA
ACATTAGTGA TTTTCAATAA TGATGGTAGC CATCAAGAAT ACCCATTTAC TGAAGAATAC
GGTGCTATAA AATATACCTT TATCGAAGGT GTTACTGCTG GCTGCATTTA TGCTTTTAAA
ATCATAAAAG ATAAAGAAGA ATTATTACTT CTTGATCCTT ATGCAAAAGC ATTAGCTAAT
ACACCTCATT ATCAAACACC CTATACCTCA GAGCAAAGTT GGACACTGGC ACAATCCGTC
GTTATTAATA ATGAATTTGA TTGGCAGCAA ACCTCAAGAC CAATGATCCC CCACTCTGAA
ACTATCTTAC TAGAAACCCA TGTAAAAGGG TTTACCCTAC TTAACACTAA GGTAAAAGAA
GAAGTTCGGG GAACTTACCT TGGTTTAGCG GATCCTGCTA ATATTGCACA TTTAAAACAG
CAAGGGATTA CTTCAATCCA GCTACTTCCT GTTGCTGCTT GTATGCACGA ACCACATTTA
CTTGATATGA AAATGGTCAA TTATTGGGGG TACAATCCAC TCTCATTCAT GGCTCCAGAT
CCAAGGTACG CAAAAAACGA TGCCGTTATA GAATTAAAAA CTGCCGTTAG AGAGCTTCAT
AAAAACAACA TCGAAGTCAT TTTAGATGTT GTTTATAACC ATACGGCAGA GGGAGGTAAT
GGCGGCTCAA TATTTAATTT AAAAGGATTA GATCAGGACT ATTATCTGCA CCACCACGGT
AACTACACTA ACTATACAGG TTGTGGGAAT ACACTCGACA TTACGCATCA AGCAAGCTTA
AATTTAGTCA TGGACACTTT ACGCTACTGG GTAGAACAAT ATCATATTGA TGGTTTTAGA
TTTGATTTAG CCGCTACATT AGGCCGAGAA TATGACCAAT TTAACCCCAA CAATGCTTTC
TTCAAAGCAG TCGCTCAAGA TCCTATTCTT CAAAGAGTGA AGATGATTGC AGAACCTTGG
GACATTGGCC CTAACGGTTA CCAAGTAGGG GAGTTCCCTG ATGGTTGGAA CGAATGTTGT
GATAAGTATC GCGACACGAC AAAAAGCTTT TGGCGCGGTG AACAAAATCA CATCAAATCC
TTAGCGACAC GACTTATGGG ATCTCGAGAT CTGGTTAGTG CTTCACGATG GCCTCACAAA
TTACCCGTAA ATTACGTCAG TTATCATGAT GGATTTACAC TGCAAGATTT GGTCAGTTAT
AAAGATCGTC ATAATCATGC GAATGGCGAA AATAATCGAG ATGGACATGG CGATAATCGC
TCAGATAATT ATGGTATTGA AGGGACGACC AGTAATCCAA GGATTATTGC TCTACGTGAA
AAACAAAAAC GGAATATGAT GACGACCCTT CTGTTCAGTT TTGGCATTCC ACACTTACTC
GCTGCTGATG CTTGCTCACA TACACAGCAA GGGAATAATA ACGCGTATTG CCAAGACAGT
ACTATTAGCT GGGTTAACTG GTCACTCAAT CGAAATGCAA AAGAATTCAA AGCATGGTTG
GCTGAGATGA TTCACGCTCG TCAAACGCAT ATGGCTCCGA TAATAAATGC ATTCAGTGGT
TCGAGAAGAA ATGGACAGAA AGTTGAATGG TACGCGCCTG ATGGGCATGT GATGAACCAC
AGTGATTGGC ATGGAGCTAA ATCATTATGC TTGCATCTCA ATGTTGATAA TGGGAATAAA
GAATTATTGA TCATTATTAA TCAGGCAAAT ACAGCGACTC AATTTATACT TCCTGAAGCC
ACAGAACAGC GTCGTTGGTT GTTAATTTGT GATACTCAAT ACAATAAATT GACGTCAAAA
CAAACCCTAT TTGACTATAG TTTGTCACCT CTTTCTATTG CTATCTTCGC GACACAATAA
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| Protein sequence | MLFIQRYIVI TNQAFPYPLG ANLKAHGCNF SVHYASDYPL TLVIFNNDGS HQEYPFTEEY
GAIKYTFIEG VTAGCIYAFK IIKDKEELLL LDPYAKALAN TPHYQTPYTS EQSWTLAQSV
VINNEFDWQQ TSRPMIPHSE TILLETHVKG FTLLNTKVKE EVRGTYLGLA DPANIAHLKQ
QGITSIQLLP VAACMHEPHL LDMKMVNYWG YNPLSFMAPD PRYAKNDAVI ELKTAVRELH
KNNIEVILDV VYNHTAEGGN GGSIFNLKGL DQDYYLHHHG NYTNYTGCGN TLDITHQASL
NLVMDTLRYW VEQYHIDGFR FDLAATLGRE YDQFNPNNAF FKAVAQDPIL QRVKMIAEPW
DIGPNGYQVG EFPDGWNECC DKYRDTTKSF WRGEQNHIKS LATRLMGSRD LVSASRWPHK
LPVNYVSYHD GFTLQDLVSY KDRHNHANGE NNRDGHGDNR SDNYGIEGTT SNPRIIALRE
KQKRNMMTTL LFSFGIPHLL AADACSHTQQ GNNNAYCQDS TISWVNWSLN RNAKEFKAWL
AEMIHARQTH MAPIINAFSG SRRNGQKVEW YAPDGHVMNH SDWHGAKSLC LHLNVDNGNK
ELLIIINQAN TATQFILPEA TEQRRWLLIC DTQYNKLTSK QTLFDYSLSP LSIAIFATQ
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