Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0225 |
Symbol | soxR |
ID | 6961692 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | + |
Start bp | 248666 |
End bp | 249112 |
Gene Length | 447 bp |
Protein Length | 148 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643381535 |
Product | redox-sensitive transcriptional activator SoxR |
Protein accession | YP_002264577 |
Protein GI | 209809039 |
COG category | [K] Transcription |
COG ID | [COG0789] Predicted transcriptional regulators |
TIGRFAM ID | [TIGR01950] redox-sensitive transcriptional activator SoxR |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAAATG AAAAAACATT GCTGACGATC GGCATGCTTT CAGAGCGAAG TGGTGTTGCC GATTCTGCAT TGCGATTCTA TGAAACTAAA AATCTCATTG CCTCTATCCG AACGGCAGGA AATCAGCGCC GTTTTCATCC GTCAATGTTA AGGCGCATTG CGCTTATTCA AGTGGCTCAG CTTGTTGGTT TTACGCTAGA AGAAATAACG AAAGAGTTAG CTGACTTACC CATGAAGGAA ACGGCGACAA GACGTGATTG GGAAAAGGTC GCAAAGAAAT GGCAAAAAGA TCTCGATAAA AAAATTGAAC AAATCCAGTC TCTTAAAGAA AACTTAACCG GATGTATTGG CTGTGGTTGT TTGAGTATGG ATAGATGTCA GTTATTAAAC CCTGATGATA TTTTGCATGA AGAGGGCAAT GGTGCTCAAC GCTTGTTATT AAAATAA
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Protein sequence | MLNEKTLLTI GMLSERSGVA DSALRFYETK NLIASIRTAG NQRRFHPSML RRIALIQVAQ LVGFTLEEIT KELADLPMKE TATRRDWEKV AKKWQKDLDK KIEQIQSLKE NLTGCIGCGC LSMDRCQLLN PDDILHEEGN GAQRLLLK
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