Gene VSAL_II0161 details

Gene Information

• Locus tag: VSAL_II0161
• Symbol: cyoC
• ID: 6962450
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: -
• Start bp: 187395
• End bp: 188003
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 643381480
• Product: cytochrome o ubiquinol oxidase subunit III
• Protein accession: YP_002264522
• Protein GI: 209808984
• COG category: [C] Energy production and conversion
• COG ID: [COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3
• TIGRFAM ID: [TIGR02842] cytochrome o ubiquinol oxidase, subunit III

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTACGCTA ATCCAACGGC TGAGCATAAA CATGATGATC ATGATCATCA CGATGCGAAT 
GAAATGAAGC AATATGGTTT TTGGATTTAC TTAATGAGCG ACTGCATTTT GTTTGGCTCT 
TTATTTGCCA CTTATGCAGT GCTTGTTAAC GCCACTGCCG GTGGGCCAAG CGGAAAAGAC 
ATTTTTGAAC TGCCATTCGT GTTTGTTGAA ACCATGTTAT TACTGCTTAG TAGTATTACG 
TTTGGTTTCG GTATTATTGC AATGAAACGC GAAGATCTAG CAGGCTTAAA ACGTTGGTTA 
TTAATTACAG CGCTGCTTGG TTTAGGTTTT ATTTCAATGG AAGTGTATGA GTTTAATCAC 
TTGATTGGAG AAGGGTTTGG ACCACAGCGT AGTGCGTTTT TATCGGCCTT CTTTACCTTA 
GTGGGGACTC ACGGTTTACA TGTTACTTTC GGTTTGATTT GGTTAAGTGT GTGTTACTTC 
CAACTAAATA CCAAAGGTTT GAATGACTTG ATGAAAGGGC GCTTTTATTG CCTAAGTTTA 
TTCTGGCATT TCTTAGATAT TGTATGGATT TGTGTGTTTA CGATTGTGTA TTTGTTGGGG 
GTTATCTAA 

 

Protein sequence

MYANPTAEHK HDDHDHHDAN EMKQYGFWIY LMSDCILFGS LFATYAVLVN ATAGGPSGKD 
IFELPFVFVE TMLLLLSSIT FGFGIIAMKR EDLAGLKRWL LITALLGLGF ISMEVYEFNH 
LIGEGFGPQR SAFLSAFFTL VGTHGLHVTF GLIWLSVCYF QLNTKGLNDL MKGRFYCLSL 
FWHFLDIVWI CVFTIVYLLG VI