| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0147 |
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| Symbol | |
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| ID | 6962452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 171614 |
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| End bp | 173077 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643381467 |
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| Product | membrane associated GGDEF protein |
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| Protein accession | YP_002264509 |
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| Protein GI | 209808971 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.317347 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGAAGA GAAGTGCATT TTTTTATAGC TCATTGATCA TTGGGTTTCT TATTTTTTTC
CTTTCTGCAT CCTATATTTA TAGCGCGTAT CAAAGTGACC GCAACCGAGT GATTGATCGT
TTGCAATTTA ATGCCAGTTT TGTTGATTTG TGGCTGACTA AATCTTTCCA TGATTCGTCT
TTAGTCTTAA AGGATATGGT TGAGGACCTT TCTTCTGGAG GGCTTCATTC TGCTGATCGA
AATAATGAAA AATATCAGCA AGAACTTGAT TACCTTAGAG AAAAAGAAGA TGCACTCCCT
AACGCTATTT TAGCTTTTAT TATTGATGAG AATTGTATAT TAACGCACAG TAAAACACTG
AGTGGCGTTG ATGTTTCTCG ACGCGAGTAT TGCCGGGTTT TTAAGAAAAA CAAAGAAAGA
ACCGAGGTTG TTACTCTGCC TTTAGTCGAT CTGGCTGGCC GAGATGTCGT TATTCAAGGC
CACAAAATAA CCAATGTAAA TAACGACTTT TTAGGTATGG TGGGTATTTC GACGAATTTA
AGTTTTTTTA ATTCGACCAT CCGTCATTTG GAATTGCCTT CATCAACAGG GCTTGCAATT
TTAAGTTCTA ATCTTAAGTT GTTGTCAGCA GTGCCAAAAG GAAGTGAGAT CATTGGAAAA
AGGCTTAATG TGTCAAAAAT CAAACCAGAG GTGTTTGAAA CACTGTATAA AAATGGCGAA
GTGGTGTTCA GTTCTGACAT ATACAACGAT GGCACTATTG ATACGATTTA TGCTCGTAAA
ATTAAAGATT TGCCTTTCAT TATTGTGGTC ACCAAGCAGC AAGATTATTG GCGAACCATT
GTGTCTTTAT CGTTGCTGAG TATTGTGGGC TGTTTTTTCG TCATTATTGC GCTTCTTATG
TTTAATTTAC ATTATGTGAA ACGAACAAAA GAACAAAAAG AAAAATACTC CGAGTTAGCG
TATAACGATT ACCTGACAGG GGTGAATAAT CGCCGCTCGT TTGACCTAAA GGGTTCTCAA
GTGCTTGCGA CTTATCGCCG TAATCGAAAA CCATTTTCAA TTATTATGTG TGATATTGAT
AATTTTAAAG AATACAACGA TAAGTACGGC CATGAAGTGG GGGATACGAT GATCACCTCA
TTTGCTGAAG CGTGTTTAGC TAACTTGCGT GATTCTGATA TTTTAGGCCG TTTTGGCGGC
GATGAATTTG TCATTTTGCT TCCAGAACAA AGTCATGAGC AGGCGCATTT TGTTGCTCAA
AAGCTGCAAG CGGTGATCCG CAAGATTGCG GTGCCAATTG AAAATATCGA ATTAAGTATG
ACGTGCAGCA TGGGCATAAG CACGATCACG GATCCAAAAG TAACGATTCC TGAACTTCTT
AGTATTGCCG ATGATCGATT GTATGACGCT AAAAAATCGG GACGAGATTG TGTAAAGTGT
GATGCAATAG TTAAATCTAA TTGA
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| Protein sequence | MRKRSAFFYS SLIIGFLIFF LSASYIYSAY QSDRNRVIDR LQFNASFVDL WLTKSFHDSS
LVLKDMVEDL SSGGLHSADR NNEKYQQELD YLREKEDALP NAILAFIIDE NCILTHSKTL
SGVDVSRREY CRVFKKNKER TEVVTLPLVD LAGRDVVIQG HKITNVNNDF LGMVGISTNL
SFFNSTIRHL ELPSSTGLAI LSSNLKLLSA VPKGSEIIGK RLNVSKIKPE VFETLYKNGE
VVFSSDIYND GTIDTIYARK IKDLPFIIVV TKQQDYWRTI VSLSLLSIVG CFFVIIALLM
FNLHYVKRTK EQKEKYSELA YNDYLTGVNN RRSFDLKGSQ VLATYRRNRK PFSIIMCDID
NFKEYNDKYG HEVGDTMITS FAEACLANLR DSDILGRFGG DEFVILLPEQ SHEQAHFVAQ
KLQAVIRKIA VPIENIELSM TCSMGISTIT DPKVTIPELL SIADDRLYDA KKSGRDCVKC
DAIVKSN
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