| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0143 |
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| Symbol | |
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| ID | 6962570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 165330 |
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| End bp | 166778 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 643381463 |
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| Product | membrane associated GGDEF protein |
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| Protein accession | YP_002264505 |
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| Protein GI | 209808967 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGGTAA AAAATATTGT TTCAGTAGGG TCGCTATTAC TGCTTAGTGT GGCTCTAGCT
TGCTCTATTA CTTATGTGGT TAAAAGTAAC AATAAGCAAA GTAAACTAAT AGAAAGTGAT
TTAGAGTTTA ACGCCAATTT TGTTTCTATT TGGCTTAAAA CCGCATTTTA TCATTCAAAT
GATGTACTAC ATCAACTCTC GGATACATTA GAGCAAGATG GGTTTGCAAC ATTGCCTCTG
TCTGGTAAAT CTTATCAAGA ACAAAGTGAT GTGTTTGAGT TTCAGTATGA AACGCTGATT
AACGCAATTC ATGTTTTTGT GGTTAATAAA AATTGTATTT TATTGAATAC AAAAACGATT
GGTGGCGTTG ATCTTTCTTC CCGAGAGTAT TGTCAAATAT TAAAGCAAGA TGATAAGAGT
GTTGAATCTA TCATTACCTC TCCTTTTAAA GATCTCTTAA ATCGTAATGT GATCGTTCAG
GGTGTTAAAA TCACGGATGA AAAGAATAAC TTTGCAGGTA TTGTTGGTTT ATTAACAGAT
TTCACTTTTT TTAATCAGGT ATTGAAAAAT GTTAAATTAT CTGAGAATTC AACAATCTCT
ATTTTGAGCA GTGATTTCAC TGTATTGGCA TCAACAGCGC CACAACATTT ACCTATAGGT
GAAAAATTAG ATTTTTCTTA TATCCCTGAA AATAAAATTA AAGGATTAAA ATATAATCAA
AAGGTGATGT TTGATTCTGC TAAAACTTAT AATGGTGAGC ACCAAGGTAT TTTAGTTAAG
AAGGTATCGG ATTTACCTTT TATGATATTG GTGACTAAAG CAAAGTATTA TTGGTTTACT
CCCCTTTACA TTACTATTTT TATTGTATCG ATGTTAATGA TTCTCTTATC TTTTTTCATT
TTTAAAAATG CGTATTATTT TCAGACATTG ATATACCAAG CTGAGCATTA TTCTAAATTA
GCACTTTATG ATGAATTAAC GGGGGTATGT AATCGCCGCT GTTTTGAAAA AGTCATGTCA
TCTTTTTTAG AGGAATATAA ACAGAAAGGT GTTGTGTTTT CGTTAGTGAT TTTTGATATC
GATTTCTTCA AAGACATTAA TGATACTTAT GGCCATGATA GAGGAGATGA AGTGCTTAGA
GTTTTTAGTA AAACGTGCTC TAGTGTGATG TCACCAGAAG ATATTTTTGC TCGTTTGGGT
GGTGATGAAT TTGTAATGAT AATGGCGAAT AAAACAAGCC AAGAAGCAGC ACTTATTATG
ACTGAGCTAT TACATCAAAT TAGGCGATTA TCAGTCATGA CCTCAAAAGG TGAATTGAAG
ATATCGAGCA GTATTGGTAT TACACAAATG AAAACAAAGA ATGATGATTT TTCGGTTCTA
TTAGAGCGAG CAGATAAAGC GCTTTATCAA GTAAAAAGAA GTGGTCGAAA TGGCGTCGTC
GTCAGATAA
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| Protein sequence | MRVKNIVSVG SLLLLSVALA CSITYVVKSN NKQSKLIESD LEFNANFVSI WLKTAFYHSN
DVLHQLSDTL EQDGFATLPL SGKSYQEQSD VFEFQYETLI NAIHVFVVNK NCILLNTKTI
GGVDLSSREY CQILKQDDKS VESIITSPFK DLLNRNVIVQ GVKITDEKNN FAGIVGLLTD
FTFFNQVLKN VKLSENSTIS ILSSDFTVLA STAPQHLPIG EKLDFSYIPE NKIKGLKYNQ
KVMFDSAKTY NGEHQGILVK KVSDLPFMIL VTKAKYYWFT PLYITIFIVS MLMILLSFFI
FKNAYYFQTL IYQAEHYSKL ALYDELTGVC NRRCFEKVMS SFLEEYKQKG VVFSLVIFDI
DFFKDINDTY GHDRGDEVLR VFSKTCSSVM SPEDIFARLG GDEFVMIMAN KTSQEAALIM
TELLHQIRRL SVMTSKGELK ISSSIGITQM KTKNDDFSVL LERADKALYQ VKRSGRNGVV
VR
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