Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0142 |
Symbol | rhlE |
ID | 6961620 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | + |
Start bp | 163541 |
End bp | 165028 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643381462 |
Product | putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) |
Protein accession | YP_002264504 |
Protein GI | 209808966 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTTTTA CCTCTCTGGG CTTATCTGCC CCTATTTTAA AAGCTGTAGA AGCTCAAGGT TACAGCACGC CTTCACCAAT CCAATTACAA GCGATTCCAG CGGTAATTGA AGGGAAGGAC GTTATGGCGG CGGCTCAAAC AGGAACAGGT AAAACAGCAG GCTTTACACT TCCTCTTCTT GAGCGTTTAT CAAAAGGTCA AAAACTTAAG TTTAACCAAG TTCGTGCATT AATCTTAACA CCAACTCGTG AGCTTGCAGC GCAAGTGCAT GAAAGTGTTG AAAAATACAG TGTGAATCTT CCACTAACTT CTGATGTCGT ATTTGGTGGC GTTAAAGCAA ACCCACAAAT GCAACGCCTT CGTAAAGGTG TTGATGTATT GGTTGCAACC CCTGGCCGTT TGTTGGATCT TGCGAATCAA AATGCAATTA AATTCGATCA ACTGGAAATT CTAGTTTTGG ATGAAGCTGA CCGTATGTTA GATATGGGCT TTATTCACGA CATTAAAAAG ATCTTAAATA AATTACCTAA GAACCGTCAA AATCTACTTT TCTCTGCGAC GTTCTCTGAT GAGATCCGTC AGTTAGCAAA AGGGCTTGTA AATAACCCCG TTGAGATTTC AGTAGCAACG CGTAACACAA CGGCAGAAAC GGTTGAACAA TCAGTTTACG TTGTTGATAA AACGAAAAAA GCGCGTGTTC TTACTAAGCT AATTAAAGAC AATGACTGGA AACAAGTATT GGTTTTCAGC AAAACTAAAC ATGGTGCAAA CCGTTTAGCG AAGACTCTTG AAGAGAAAGG CATTAGCTCT GCGGCTATCC ATGGCAATAA GAGCCAAGGT GCACGTACGA AAGCATTAGC TAACTTCAAG AGCGGTCAAG TTCGTGTATT AGTAGCGACA GACATTGCTG CTCGTGGTTT GGATATCGAG CAATTACCAC AAGTTATCAA CGTTGACTTA CCAAAAGTGC CTGAAGATTA CGTTCACCGT ATTGGCCGTA CTGGTCGTGC TGGCGCAACG GGTAAAGCAA TCTCTTTTGT GAGTGAAGAT GAAGCAAGTG AATTGTTCGC GATTGAGCGT CTAATTCAAA AAATCTTACC TCGTCATACA TTAGAAGGTT TTGAACCTGA AATGAAAGTG CCTGAGTCAA GATTAGATTC TCGTCCTATC AAAGCAAAGA AACCAAAGAA AACACATGCA CCACGTGTAG AGCATAAAGA TGGTCAACGT TCAGGTGAAA ACCGCAGTGG TCATAAGCAA GGCGCGAAAC CGGCTCCAAG ACGTAACACT GAGAATAAAG ACGGTGCTGC TAAGAAAGAA GGCGGTAATG CTAAGAAACG TCCTACTGAT GGTGGTAAAC CTAGATCGAA AGGCAATGGT GAAAACCGCG GTAATGGCAG TAACTTTGGT AGTGGTAAAC CAAAATCAGA TGCGACAAAA CCACGTCGCC AAGGCCCACG TCCAGCGCGT AAGCCAGTAG CTCAATAA
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Protein sequence | MGFTSLGLSA PILKAVEAQG YSTPSPIQLQ AIPAVIEGKD VMAAAQTGTG KTAGFTLPLL ERLSKGQKLK FNQVRALILT PTRELAAQVH ESVEKYSVNL PLTSDVVFGG VKANPQMQRL RKGVDVLVAT PGRLLDLANQ NAIKFDQLEI LVLDEADRML DMGFIHDIKK ILNKLPKNRQ NLLFSATFSD EIRQLAKGLV NNPVEISVAT RNTTAETVEQ SVYVVDKTKK ARVLTKLIKD NDWKQVLVFS KTKHGANRLA KTLEEKGISS AAIHGNKSQG ARTKALANFK SGQVRVLVAT DIAARGLDIE QLPQVINVDL PKVPEDYVHR IGRTGRAGAT GKAISFVSED EASELFAIER LIQKILPRHT LEGFEPEMKV PESRLDSRPI KAKKPKKTHA PRVEHKDGQR SGENRSGHKQ GAKPAPRRNT ENKDGAAKKE GGNAKKRPTD GGKPRSKGNG ENRGNGSNFG SGKPKSDATK PRRQGPRPAR KPVAQ
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