| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0113 |
|---|
| Symbol | exbB2 |
|---|
| ID | 6962606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 139463 |
|---|
| End bp | 139972 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643381435 |
|---|
| Product | TonB system transport protein ExbB2 |
|---|
| Protein accession | YP_002264477 |
|---|
| Protein GI | 209808939 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCTT TTCTCTCTCA TTTTATGGCA CAAGGCGGCC CCATTTTATG GTGGTTGGGC
GCAGTTGTTG CGGTATGTTG GTTATTGGTG GTTGAGCGTG TGTTTTTCTT ATTATTCACT
TTTCCTGCAC AACGAAAAGT ATGGTTAGAT AAATGGCAAC AGCGAGACGA TCATGATTCG
TGGTATGCGA AAACGATCCG TGATGGTTGG GTAAGCGAAG CTCATCTTCA ATTAAATCAA
TATCTGAATT TTATCAAAGT TCTTGTGGCA ATTTGCCCAA TGCTCGGTTT GCTAGGCACA
GTAACAGGCA TGATCTCTGT GTTTGATGTA ATGGCAAATC AAGGCAGCAG TCAACCTAAA
TTGATGGCGT CTGGTATTTC ATTAGCCACA TTGCCTACGA TGGCTGGAAT GGTAGCAGCA
TTAGCAGGAA TGTTTGTTCA TGCTCGTTTA GCCAAAGTCT GCCGCCGTAA AGAACATCAT
TTAGAAAAAG CATTAAGGAG TCAGTCATGA
|
|---|
| Protein sequence | MTAFLSHFMA QGGPILWWLG AVVAVCWLLV VERVFFLLFT FPAQRKVWLD KWQQRDDHDS
WYAKTIRDGW VSEAHLQLNQ YLNFIKVLVA ICPMLGLLGT VTGMISVFDV MANQGSSQPK
LMASGISLAT LPTMAGMVAA LAGMFVHARL AKVCRRKEHH LEKALRSQS
|
|---|
| |