| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0064 |
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| Symbol | |
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| ID | 6961551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 91947 |
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| End bp | 93236 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643381393 |
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| Product | putative type I secretion protein, HlyD family |
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| Protein accession | YP_002264435 |
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| Protein GI | 209808897 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCAAT TTAGTACCAC TCGTATTATT ACTCTCTGCT CTGCCTTTAT TTTATTAACC
ATAGGTGGGT TTGTTTGGTG GGCAACAACA GCGCAACTAA GCTCTGCATC TATCGCAAAC
GGTTCATTGA TCGTCGAGTC TCAGCGTAAA AAAATTCAAC ATCTACAAGG TGGCTGGGTA
AAAGCAATTC ATGTCACTGA AGGCCAACAT GTAGAGAAAG GCGACTTATT AATTGAGCTA
GCGAACACTA AAGCTGATTC TGATTACTAT CGCCTAATGC TACGATCTAT TTCTTTAAAA
GCAACCATTG AGCGACTTCA AGCCGAGTTA AGCGATAACA ACATCGTATC ATGGACAGAG
GAATATCATG ACGAAGCAAA CAGTGCTGAT GTCATGAACA TTTTAAATAA TCAGACACTT
CAATTTCAGC AGTTTTTATT ACGTAATGAG CTTCGAACTA ACCAATACAC TCAAAATAAA
GAACAACTAA CTGAACAAAT TCGTGGTTCT AAATCCCAAT TAAAATCCAT AAAACGTCAG
CTTCAATTGG TAAGTAAAGA AATTAACATG ATGAAAGGGC TAGTAAAAAA AGGATACGTT
TCCCAAACTA AAATGTTTGA AATACAACGC CATCAAGCCA GTATTGAATC TCAACGAGAA
GAGCTACAAA CTAAGATTAA TGTCTCGACT CGTCAGTTAA CCTCACTCAA ACAAGATTTT
GAAGCCAAAG ACATTGAATT AAAACAGTCC CTTTCCTCTC AATCAAATCA GTTAGAAAAA
GAATGGTTAG ACACTAATCA GGCCTTAATA ACGGCTCTAG ATGTTCGATC ACGCATCAAA
GTAAGAAGTG AGCATACTGG CACTATTGTT GGTTTAAACA TTCACAGTAT TGGGGGAGTT
GTTAATCCTG GCGATATTAT TATGGAAATC GTACCAAACA ATGAACAACT TATCGTTCAA
GCCATTATTA AGCCCGAAGA CATTGATGTA GTAAGAACAG GACAAACCGC AAAAGTAAGG
CTAAATGCGT ATAACGTCCG TAAAACACCC CCAATTACGG GAACCGTCAT TTATGTCGCG
GCGGATAGAC TAAATAAAAA AGGGGAGAAA GAAAGCGGAT ATTTGGTGAA AGTTCAATTG
CTTCAAGAAG AGATAACCAA ACTCACTAAC GTCGAACTTT ATCCTGGGAT GCCAACTGAT
GTTTTAATCT TATTAGAAAA TCGGACGCTC TGGGATTACT TTACCGCACC GTTATTTAAC
TCTTACTACA AAGCATTTCG TGAACAATAA
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| Protein sequence | MTQFSTTRII TLCSAFILLT IGGFVWWATT AQLSSASIAN GSLIVESQRK KIQHLQGGWV
KAIHVTEGQH VEKGDLLIEL ANTKADSDYY RLMLRSISLK ATIERLQAEL SDNNIVSWTE
EYHDEANSAD VMNILNNQTL QFQQFLLRNE LRTNQYTQNK EQLTEQIRGS KSQLKSIKRQ
LQLVSKEINM MKGLVKKGYV SQTKMFEIQR HQASIESQRE ELQTKINVST RQLTSLKQDF
EAKDIELKQS LSSQSNQLEK EWLDTNQALI TALDVRSRIK VRSEHTGTIV GLNIHSIGGV
VNPGDIIMEI VPNNEQLIVQ AIIKPEDIDV VRTGQTAKVR LNAYNVRKTP PITGTVIYVA
ADRLNKKGEK ESGYLVKVQL LQEEITKLTN VELYPGMPTD VLILLENRTL WDYFTAPLFN
SYYKAFREQ
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