| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0063 |
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| Symbol | |
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| ID | 6961550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 90232 |
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| End bp | 91932 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643381392 |
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| Product | putative type I secretion system, ATP-binding protein |
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| Protein accession | YP_002264434 |
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| Protein GI | 209808896 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTTAAGG ATAAGCTGAA AAAATCACTG TCAGAAACAA AGAGAGACGT ATCGTTTGCC
TTACTCTTTA GCTGTGCAAT CAACTTTCTC GTACTTACGT TACCCATTTA CAGTTTGCAG
CTTTTTGACC GAGTGCTTGG TAGCTCTAGC TTAGACACCC TATACGCTTT ATTATTTATT
GCTGTTTTTC TTTTAACAGC ACAAGCCGTT ATCGAATATT TCCGTATTGC TTTGTTACAG
CGTTCAGGCT TGAAACTCGA TGTTTCTATT AGCTCCATCA TGTTATCTGA AAGTATTCGA
CAATCAGCCA TATCCAAAAA TATTAATAAA CAAGGTTTAC AAGATCTGTC TGAGATAAGA
CGTTTCTTAT TATCCCCTTC TAGCTCTGCT ATTTTTGATA TGCCGTGGAT CCCTCTTTTC
CTTGGTATTC TATTTATGCT CCATCCTGCG ATTGGTTTAA TCACCTTATC TGGCTGCGTT
ATTTTCATTA TTTTAGCCAT TGTCATGATG CATTCTGCCA AAGAATCAAC CATTGAAAGT
AACAAGGTCG CGGCAAAAAC CACCTTAGAA TTAAACGACT ATCTCCGCAA TGCATCAACA
CTAAAAGCCA TGGGGATGGC AGAAAGCATT GGTAAATATT GGAATAAACA AAACCATAAG
ATGCTTGGTT TACAGTGGGT AGTAAATTCT CGTATCGGGC AGTTACTCGC CATCAGCCGC
TATTTTAGAA CTATTTTACA AGTGCTTATA TTAACGATTG GGGTAATACT GGCATTACAA
CAAGAGATTG GAACGGGGGC TATAATCGCA AGTTCCATCA TTATGGGGCG AGTACTTTCT
CCTTTCGAAC AAGCCGTTAA TGGCTGGAAG TCATGGTTCA GTGCATTTAA AGCGTATCAG
CGCCTTAAAA ACTTCTCTTT TATTGAAGAG TACGCAGCAA AAACCACACT ACCCAACCCT
AAAGGTGACA TTCTCTTTCA AAACGTGGGA TTAAAACTGC CACATAAAAA AGAACCCGTT
TTGCAAAACA TCAATTTCAA ATTAGGTCAT GGTAATGCAC TCGCTATTTT AGGCAATTCC
GGTTCAGGTA AATCAACATT AGCGTCGTTA TTAATGGGGA TTCATGCGCC GAGTGTCGGT
TCAATAAAAA TAGACGGTGC CGCGATTCAT CTTTGGCCAG AAAAACAATT TGGTCAACAC
ATCGGATATT TACCGCAACA AGTCGGTTTA TTATCCGGCA CCATTGCTGA AAATATTTGT
CGATTTACCG AAGCTACAGA TGAAGACATC ATCGCAGCCG CTCGTTTAAC CTGTATTCAT
AAACTGATTA TTTCTCTTCC TCAGGGCTAC GATACCTACT TAGAAGAAGG GGGCAGTTCT
CAACTCTCTG GTGGACAAAA ACAACGTATC GCCTTAGCTC GAGCTATTTT TTCCAATCCC
TCAATTCTTG TGTTGGACGA ACCAAACTCA AACCTTGATC CCGAAGGTGA AATTGCGTTG
GCTATTGTTC TGCAATACTG TAAAGAAAAC AAAATCACCG TAATTATGAT AAGCCACCGC
CCTGGTTTTT TACGCCAAAT GGATTGGGTG ATCTCGTTAA AAGAAGGACA AGTTCAGAAG
GCGGGGCCAT CAAAACTATT TTTAGAAGAG ATGTCTGCCA TTGATAACCC TAACTCTGTT
ACTGTTCCTA AAACAGCGTA A
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| Protein sequence | MFKDKLKKSL SETKRDVSFA LLFSCAINFL VLTLPIYSLQ LFDRVLGSSS LDTLYALLFI
AVFLLTAQAV IEYFRIALLQ RSGLKLDVSI SSIMLSESIR QSAISKNINK QGLQDLSEIR
RFLLSPSSSA IFDMPWIPLF LGILFMLHPA IGLITLSGCV IFIILAIVMM HSAKESTIES
NKVAAKTTLE LNDYLRNAST LKAMGMAESI GKYWNKQNHK MLGLQWVVNS RIGQLLAISR
YFRTILQVLI LTIGVILALQ QEIGTGAIIA SSIIMGRVLS PFEQAVNGWK SWFSAFKAYQ
RLKNFSFIEE YAAKTTLPNP KGDILFQNVG LKLPHKKEPV LQNINFKLGH GNALAILGNS
GSGKSTLASL LMGIHAPSVG SIKIDGAAIH LWPEKQFGQH IGYLPQQVGL LSGTIAENIC
RFTEATDEDI IAAARLTCIH KLIISLPQGY DTYLEEGGSS QLSGGQKQRI ALARAIFSNP
SILVLDEPNS NLDPEGEIAL AIVLQYCKEN KITVIMISHR PGFLRQMDWV ISLKEGQVQK
AGPSKLFLEE MSAIDNPNSV TVPKTA
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