| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0058 |
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| Symbol | |
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| ID | 6961545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 82627 |
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| End bp | 83997 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 643381387 |
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| Product | putative type I toxin secretion system, outer membrane efflux protein |
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| Protein accession | YP_002264429 |
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| Protein GI | 209808891 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAAA CAAACCGCTC TCGTGCTTTT TTTCTGGTCG GCCTATTTGC GGCATGGCAA
CCAATGAGTC ACGCCAGTGA ATTATCTGCC TTGATAAATG AAGCACTCAA AAATAACTAT
CAAATCCTAA ACTCTAAATA CGAAGTCGAG TCTTCAGAGT TTGATCAAAG TATCAGTGGT
GCCTTTTTTT TCCCTACGAT TAATGCCAAT GCAAATACGA CATGGAATGA TTCAGAAGTC
GATTCAAGTA CTCCATCAAA CAATGAATAC AACAGCTACG GCTATCGCGT TTCGGTATCT
CAAACCATCT TAGATATGTC GAAAATTCGC TCTTATCAAG AAAGTGGCAT TGATTTACAA
ATCAACAAAC TAAAACACGA TAAAATCGTA AACGACATCA TTATTCAGGT GGTAGAAAAC
TACTTCTCAT ATCTGAAATA TCACTCTCAG AAAAAAGCGA CCGATGCACA ATTTCGCTCA
TCAGAAGCAC GATTAAAGCA AATAAGTCGT AATAATGAAT TGGGTAATTT ACCTAAAACA
GACGTCTACG AAACCCAAGC TCAGAAAGAA TCAACCTATA AGCAATTGGC CGACATTCGT
AAACGTATTA ATCTCGCGTT AGTTCAATTG CAATCTACCA CTCAAGCGCC TATTCGACCG
TCTTATGATG TGAAACTCAA TAATCAATAC GCTGAAATTG ATTATTATGA AAAAAGCACT
CTTGAGAAAA ATCTCATTGG CAGTAATTAT GATATTGCGA TTGCAAAATC CAACTTAGAT
AAATCGAAAC GATCTCTCAC TCAATCTCGT TCTGATTTCT ATCCGACCCT ATCTGCATCC
GCTAATTATG AATACACCGA CAGTAATTTT GATAGCTCAA GAACCGATGA CGCGACTTAC
GCCCTCACCG TCGACATCCC TATTGTTAAC GGAGGCTCTG ATTATTACGA TTATCAAAAA
AGTAAAACGA AAATCAATCA ATTCTCATCT CAATATGATC AAGCAGTAAA TGACAATCGA
GTTAATTTCG AAGAACTTAT CTACAATATC AATACCAATG TAGAATCGTT AGCTATTTTA
AAATCCATTA TAAAATCCAA TTACCTTGTC TATAAAGGTA ATCAAAGCGC GTTTAAATTA
GGCACAAAAA CACTCACGGA TTTACTCAAT TCAGAATCGG ATTTATACGA CAACATCCGT
GAATATCATA CCAATCAATA CGATTACATC ATTAATATGA CCAAGCTCTA CGCTCTATTT
GGAGCGGTAG ATTTAGTATC GATTGAAGAG ATATCGAATC GAATGGAACC CATTAGTGAC
ACCTTTGACA TCTCGATTTT AGAACGCTTT ACATCAGAAG GAGTTAAATG A
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| Protein sequence | MTKTNRSRAF FLVGLFAAWQ PMSHASELSA LINEALKNNY QILNSKYEVE SSEFDQSISG
AFFFPTINAN ANTTWNDSEV DSSTPSNNEY NSYGYRVSVS QTILDMSKIR SYQESGIDLQ
INKLKHDKIV NDIIIQVVEN YFSYLKYHSQ KKATDAQFRS SEARLKQISR NNELGNLPKT
DVYETQAQKE STYKQLADIR KRINLALVQL QSTTQAPIRP SYDVKLNNQY AEIDYYEKST
LEKNLIGSNY DIAIAKSNLD KSKRSLTQSR SDFYPTLSAS ANYEYTDSNF DSSRTDDATY
ALTVDIPIVN GGSDYYDYQK SKTKINQFSS QYDQAVNDNR VNFEELIYNI NTNVESLAIL
KSIIKSNYLV YKGNQSAFKL GTKTLTDLLN SESDLYDNIR EYHTNQYDYI INMTKLYALF
GAVDLVSIEE ISNRMEPISD TFDISILERF TSEGVK
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