| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0034 |
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| Symbol | |
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| ID | 6961526 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 44608 |
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| End bp | 45717 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643381364 |
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| Product | secretion protein, HlyD family |
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| Protein accession | YP_002264409 |
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| Protein GI | 209808871 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACAT CTACATTAAT GCTGTTAAAA AGAACCACTC TCACAGTGAA CCTTATAATA
GGTACGATTT TTCTCTCTGG ATGCGATACG AATGAAACCA TTCAAAACTC AAGTCCTCCT
GTCGTTATCA GGCCTGCACT TATTGAAATC ATTACGCACA GTGTAGATGC TAAATCACGT
TTTAATGGCG TGGTTCGTTC CGCTCAACGG GCCGATCTTG CATTTCGAAT GAATGGACGT
GTCATTGATA TATTCGTCGA AGAAGGGCAG CAGGTAAAAA AAGATCAATT ATTGGCTCAG
CTAGACCCAA GAGATGCAAA AAATGCGTTA GCCTCAGCAC GCCTTGAGTA CACAAACAGT
AAAGCTGAAT ACACTCGTGG AAAAGCGATT TACGAAAAAA GCCAAGCCAT TGCAAAAAGT
GATCTAGATA CATTAAGTAC TCGATATAAT CTAGCAAAAA ATCGATTAGA AGATGCAAAA
CGTCAATTAG AATATACCCA ATTAATTTCG CCGTTTGACG GTGTCATTGG GCAGAAAATG
ATTGATAATC ATGTTCAAAT TCAAGCTAAC ACCCCCGTGC TAACAGTGCA TAACGTTAAT
AAATTGGAAG TACTGATTAA TATTCCAGAC CGTGTCATGC TTGGGGAGTT AAAGGGATCA
CAAGCGTTAG CTCAAATTAG TGCACTCCGT AATGAAAACT TTCCTCTCTT GTTAAGTACC
TATGGCACTC AAGCAGACCC AATCACACAG ACTTACCCTG TCGTGCTAAC GTTTGAAGAT
CTTCGTGGAT TTAATGTTCT ACCCGGAATG ACTGTAAAAG TAGTGCCCGT TTATCCAAAA
ACTCAATCAT CAGCATCGAC ACTCGTTACC ATTCCACTCA CAGCGGTGGT ACCAAATAAT
CAAGGCGATC AATTTGTATG GATTGTTGAT CAACAAAATA AAATACAATC ACGTCCAATC
AAGGCTGGTG CACTCTTCTC AAATCGAATT GTAGTTAATG AAGGATTATA CGCCGGAGAA
CGCATCGTTA TTGCAGGCGT TTCAAGTTTG ACTTCAGGAA TGGAAGTAAA ACCTTACACC
GATATACTTG TAATACGTAG CGGGGAATAA
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| Protein sequence | MNTSTLMLLK RTTLTVNLII GTIFLSGCDT NETIQNSSPP VVIRPALIEI ITHSVDAKSR
FNGVVRSAQR ADLAFRMNGR VIDIFVEEGQ QVKKDQLLAQ LDPRDAKNAL ASARLEYTNS
KAEYTRGKAI YEKSQAIAKS DLDTLSTRYN LAKNRLEDAK RQLEYTQLIS PFDGVIGQKM
IDNHVQIQAN TPVLTVHNVN KLEVLINIPD RVMLGELKGS QALAQISALR NENFPLLLST
YGTQADPITQ TYPVVLTFED LRGFNVLPGM TVKVVPVYPK TQSSASTLVT IPLTAVVPNN
QGDQFVWIVD QQNKIQSRPI KAGALFSNRI VVNEGLYAGE RIVIAGVSSL TSGMEVKPYT
DILVIRSGE
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