| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0019 |
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| Symbol | |
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| ID | 6961512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 20539 |
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| End bp | 21861 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643381352 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_002264398 |
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| Protein GI | 209808860 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAATGGA TCAAACTTGC GACGTGCAGT AGCTTGCTAG TTTTGAGCGT ATCAACTCAG
GCCCAGACCT TAGAGCAAGC AATATCACAA ACTCTAACGA CAAACCCTGA GGTTAAGAAA
GCATATAACG CTTATATGAG TTACGTTGAA GACAGCAATA GTGTTTCTGG TAATTACTTA
CCTTCTATTG ACTTAGATGC GGGGATTGGA CTTGAAAACA TTAATCCTGC ACCTAATAAT
GGTGATGACA CAAGCTTAAC GAGAAAAGAT GCAACATTGT CTTTAACTCA GCTAATTTGG
GATGGTTCAA GTACGATTAA TGATATGGAT CGTACCCAAG CTGAAGCCGA ATCGGCTCGG
TTACAACTCA TCTCTCTTGG TGAAAATAAA GCATTAGATG TATCCCAAGT CTACCTAGAT
GCGGTTAAAG CAACCGAAAT CCTCGCTCTT TCTGAAAGCA ACTTAGCAAT TCATAAAAAA
ATATATAAAG ACATAAAGAA AAGAGCAGAA TCAGGAATAG GTTCAACAGC CGATGTATCT
CAAGTAGAAG CTCGTATTGC ACGTGCCCAC GGTAATTTAC TTGCAGCACA AAATAATTTA
TTTGATACGC ATACCGTCTT TACTCAAATA GTCGGCTCTC CACCTCAAGC ACTCATATAT
CCTAGAGCTG ATGCAAATAC GCTGCCTTTA AGCCTACAAG AAGGCGTAGA GCGAGCTTAC
GAACACCATC CAGTCATCCT TATTGCACAG TCCGACATTC AAGCTGCAAA ATATCAATAC
GCACAATCTA AAGGCACCAA TTACCCGACG CTCTCTTTTG AAGCAGCTCA AACTTGGCGT
GATGATGCTG GTGGTATAGA AGGAAGCAGT GACGAATTTT CAGCAATGGT TCGCATGCGT
TACAACTTAT ATAACGGCGG AAGTGATAAT GCACAATCAG AAAAAAGTGC TTATCAATTA
AATATGGCAA AAGATCTGCG AGATAGTGCT TATCGAAACG TTGAAGAAGG ATTTCGTCTA
TCATGGAGTG CGCTAGATTT AACATTACAA CAGAAAGAAT TCTTAGCCGA TCATGTTGAT
GCAGCCTCCG ATACAGTTAT TGCTTATGAA AAACAATATC GTATTGGGAA GCGAACTCTT
TTGGATCTAT TAAACACAGA AAACGAATTA TTTGAAGCCA GAAAATCTTA CCTAGATGCC
CATTACGCTG AACAGTTTGC AAAATTTAGA GTATTGCATG CAACAGGTAC ATTGATTCCA
TCATTACTTA TTGATACCCC TAAAGAATGG AATTCACAAA AATCTAAAGA AGAGGAGAAA
TAA
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| Protein sequence | MKWIKLATCS SLLVLSVSTQ AQTLEQAISQ TLTTNPEVKK AYNAYMSYVE DSNSVSGNYL
PSIDLDAGIG LENINPAPNN GDDTSLTRKD ATLSLTQLIW DGSSTINDMD RTQAEAESAR
LQLISLGENK ALDVSQVYLD AVKATEILAL SESNLAIHKK IYKDIKKRAE SGIGSTADVS
QVEARIARAH GNLLAAQNNL FDTHTVFTQI VGSPPQALIY PRADANTLPL SLQEGVERAY
EHHPVILIAQ SDIQAAKYQY AQSKGTNYPT LSFEAAQTWR DDAGGIEGSS DEFSAMVRMR
YNLYNGGSDN AQSEKSAYQL NMAKDLRDSA YRNVEEGFRL SWSALDLTLQ QKEFLADHVD
AASDTVIAYE KQYRIGKRTL LDLLNTENEL FEARKSYLDA HYAEQFAKFR VLHATGTLIP
SLLIDTPKEW NSQKSKEEEK
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