| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0015 |
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| Symbol | |
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| ID | 6961508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 16639 |
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| End bp | 17757 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643381349 |
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| Product | secretion protein, HlyD family |
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| Protein accession | YP_002264395 |
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| Protein GI | 209808857 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCTA AAACACTTCT TGCGTCTTTG GTGAGTGCAG CTTTACTCGT TGGCTGCAGT
GATGACACGG TGAAAAATAC CCCTCCCCAA GCCCCTCTTG TTGTTGCTCA TACCGTTGAG
TCAATTCAAT ATCAACAAGG CAAAACCTAT ATTGGTCGTA TTGAAGCAAT GGAAGATGCC
TCTATTGTGG CTCATGTTTC TGGCTATATT CAGTCTCGCT CATTTAAAGA AGGCCAAATG
GTCACTAAAG GCGATGTACT TTTCCAAATT GATCCTTCTT CTTTTGAAGC CCAAGTCGCC
AATGCAAAAG CAGGTATTAC CCAAGCTAAT GCTGAATTGA AAAAAGCACA GCTTGATTTC
CAACGTGGTA AAAATCTTCT CCCTAAAGGC AATATTAGCC AAGCTGAATT TGATGGTTTA
ACGGCGCAAT TATTGAGTGG TGAAGCTCAG GTTGAATCGG CTCAAGCGCA ATTGAAACTT
GCAGAAGTGA ATCTTTCTTA TACGACAATC CTCGCCCCTT TCTCTGGCCG TATTAGTGAC
AGCAAAGTAA GTCTTGGTGA TTTGGTGTCT TCTGCATCGG GTGAACTGAC TACTTTGGTT
AGCTTAGACC CGATTCAAAC TCGATTTACT ATCAGTGAGC GTGAGCGTTT ATTGATGGGT
ATTGATCAAG TAAAAGGCGA TGGTTCTGGC GCGTCTAACC AAGTTGAAGT TGTGCTTAAT
CTTGAAAATG GTGAAGAGTA TAAACACCTA GGTAAGATTG ATTACATTAG TAACCGAATT
GATCAAACTA CGGGCACATT AACGCTTAGA GCATTGGTTG ATAACCCTGA TTACACTCTT
TTACCTGGCC AGCATATCAA TGTAAACCTA CGTGAAAAAA TACCAACTGA CGTTGTGGTG
ACTCCAAGAC GTGCAGTGCA AAGTGATTTA GAAGGCAGTT TTGTCATGGT ATTAACTGAA
GGTAATGTGG CAGAAAGACG CAACGTTACT TTGGGTAAAC AATTACCAGA AGGCGTGATT
ATCAGTTCTG GCTTAGAAGC TAATGAGCAA GTACTTGTCA AAGGATTACA GCGTGTAAGA
AACGGAGTTC AGGTTCGTCT AGAGAACGTG GAGTCTTAA
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| Protein sequence | MKSKTLLASL VSAALLVGCS DDTVKNTPPQ APLVVAHTVE SIQYQQGKTY IGRIEAMEDA
SIVAHVSGYI QSRSFKEGQM VTKGDVLFQI DPSSFEAQVA NAKAGITQAN AELKKAQLDF
QRGKNLLPKG NISQAEFDGL TAQLLSGEAQ VESAQAQLKL AEVNLSYTTI LAPFSGRISD
SKVSLGDLVS SASGELTTLV SLDPIQTRFT ISERERLLMG IDQVKGDGSG ASNQVEVVLN
LENGEEYKHL GKIDYISNRI DQTTGTLTLR ALVDNPDYTL LPGQHINVNL REKIPTDVVV
TPRRAVQSDL EGSFVMVLTE GNVAERRNVT LGKQLPEGVI ISSGLEANEQ VLVKGLQRVR
NGVQVRLENV ES
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