Gene VSAL_II0011 details

Gene Information

• Locus tag: VSAL_II0011
• Symbol: recQ
• ID: 6961505
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: -
• Start bp: 12519
• End bp: 14438
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 643381345
• Product: putative ATP-dependent DNA helicase
• Protein accession: YP_002264391
• Protein GI: 209808853
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATATC AGCAGACGTT AAAAGATGTA TTTGGTTTTG ATTCTTTAAG AGGTGGTCAA 
CAACAAGTTA TTGAAAAAGT ACTTAATGGT CATTCGTCTG CTGCCATCTT CCCGACAGGA 
TCGGGGAAAT CCTTATGCTA CCAATTACCT GCGCTTTTAT TACCAAACCT AACTTTGGTT 
ATTTCTCCTT TACTTGCTTT GATGAAAGAT CAAATTACTT TTTTAAAAAG CAAAGGCATT 
GCAGCAGCAT CCATTGATTC AACCCAAACT CGTGAAGAGA CTCAAGCCAT ATTACAAGGG 
GTAAGAAACG GCGACATCAA AATTTTGATG ATTTCCGTTG AGCGCTTGAA GAATGAGCGT 
TTCCGTCAAT TTATTGCACA GATCAACATT TCATTATTGG TCGTCGATGA AGCGCACTGT 
ATCTCAGAAT GGGGGCATAA TTTTAGACCC GATTACCTCA AGCTCCCTCA AGACAGAGAA 
GCCTTAAATA TTCCTCATGT ATTATTACTT ACCGCAACAG CGACGCCAGC GGTTATTGAA 
GACATGAGTA AAAAATTCAA AATAGAAAAA GACGATATTG TTATCACTGG CTTCTACCGT 
TCTAATTTGG ATATTTCAAT TATTCCTGTC GAAGAAGAAC AAAAACGTTC GACTTTATTT 
GCGACACTAC AACAGAAACC AAACCAACCA AATATTGTTT ATGTCACGCT ACAGCAAACG 
GCTGAGAACG TAGCTCAATG GTTACAAAGC AATGGCATTC AAGCCAAAGC CTATCATGCA 
GGTTTGAAGC ACGATATTAG AGAAGACATT CAACATAAAT TCATGAATGG TGAGCTTAAT 
TGTATTGTGG CTACCATAGC ATTCGGTATG GGTGTCGATA AATCAGATGT TCGTCAAGTC 
ATTCATTTTG ATTTACCAAA ATCCATTGAA AATTATTCAC AAGAAATTGG CCGCGCAGGT 
CGTGATGGTG CCCCTTCTTT TTGTACGGTT CTTGCTAATA CCTCAGGGCT TAATGTCTTA 
GAAAACTTTG TTTACGGTGA CACGCCTGAT AGAGAAGCCA TCCAATATGT ATTAGACGAT 
ATCTACAAAT CCTCAGATAC ATGGGAAATT CAACTATTAC GTTTATCTAA AGACAGCAAT 
GTACGTCAAC TCCCATTAAA AACATTGTTA GTGTATTTGG AGCTAAAACA AATCATTCAA 
GCAAAATACA GCTATTACGC CGATTACCGA TTCAAAACCT TAATTCCAGT CAGTGAGATC 
GTTGGTAAGT TCCAAACAGA AAGACAACAC TTTGTGTCTA TTATTTTTCA ATGCTCACCA 
AAAGCAAAAA CATGGCACAC CGTCGATTTT GATGCGCTTT GGATGGGTTA CCAAGGTGAG 
CGTAAACGTG TTATTTCAGC CCTGGATTAT TTTCATGAGC AAGGTTGGAT CGAGCTTGAA 
AGCAAGTTAA TGACCGAGGT TTATCAAGTA CTAAACAAAG TAGAAAGCAC TCACGTCCTT 
TCTCAAGAGC AGCATCAATT ATTTAAGAAT AAAGAAGAAA GCGAGATTAA ACGAATTCAT 
ACCATGCTTG ATTTCTTTGA AACCAAAACC TGTTTAAGTC ACTCATTAGC GCATTATTTT 
GCAGATTATA ACGCGCCAGA ACAGTGTGGT CATTGCTCGG CGTGTCGCTC TGAAGGAGCA 
CATCTTCCAA GGAACAGTGT GTCATTTTTA GCGGACGACG AACAAGTAAG AAGCTGGTGC 
CAAGAATTAC AAAACAACAG CAAAGCCCCT CTCGCCAATG CGGTTTTTGC ACGATTTTTA 
TGCGGTATTT CAACACCGTT AACAACGAAA ATTAAAGCCA ACAAAATGCA GGGATACGCA 
AAGTTTGAGT CTCAGCCTTT CTTTGAAGTG CTTGAATTAG TCGGAAAACT AAACGGCTGA 

 

Protein sequence

MTYQQTLKDV FGFDSLRGGQ QQVIEKVLNG HSSAAIFPTG SGKSLCYQLP ALLLPNLTLV 
ISPLLALMKD QITFLKSKGI AAASIDSTQT REETQAILQG VRNGDIKILM ISVERLKNER 
FRQFIAQINI SLLVVDEAHC ISEWGHNFRP DYLKLPQDRE ALNIPHVLLL TATATPAVIE 
DMSKKFKIEK DDIVITGFYR SNLDISIIPV EEEQKRSTLF ATLQQKPNQP NIVYVTLQQT 
AENVAQWLQS NGIQAKAYHA GLKHDIREDI QHKFMNGELN CIVATIAFGM GVDKSDVRQV 
IHFDLPKSIE NYSQEIGRAG RDGAPSFCTV LANTSGLNVL ENFVYGDTPD REAIQYVLDD 
IYKSSDTWEI QLLRLSKDSN VRQLPLKTLL VYLELKQIIQ AKYSYYADYR FKTLIPVSEI 
VGKFQTERQH FVSIIFQCSP KAKTWHTVDF DALWMGYQGE RKRVISALDY FHEQGWIELE 
SKLMTEVYQV LNKVESTHVL SQEQHQLFKN KEESEIKRIH TMLDFFETKT CLSHSLAHYF 
ADYNAPEQCG HCSACRSEGA HLPRNSVSFL ADDEQVRSWC QELQNNSKAP LANAVFARFL 
CGISTPLTTK IKANKMQGYA KFESQPFFEV LELVGKLNG