Gene VSAL_II0001 details

Gene Information

• Locus tag: VSAL_II0001
• Symbol: rctB
• ID: 6962620
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: +
• Start bp: 1084
• End bp: 3069
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 643381340
• Product: oriCII binding protein RctB
• Protein accession: YP_002264386
• Protein GI: 209808848

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.865111
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCATA TAAAAACCTC TGAAAAAGAA AAGATCTACA TACCTCTGCC TAGAGATCAC 
AAAGGTGGCC ATTTATTTGA GATCCCTGCA AATCTTGTAG ATTGGATTAC CCAATATCAA 
CATTTTAAAG GGGTAACCAA AAGTATTTTA GAATTAATGA ATCTCATTTC TCTAAAAGGT 
TTTTCTTCGC CTGATGGTTT AGTTTCAACA ACTGAAATTA TTCAAACAAC AGATGGTCAC 
TTAACCAGAG CTGCAATTCA ACAACGACTA AGAACAGCAG TTAGTATCGG TTTATTTGAA 
CAATCACCAG TACGTTTTGA AGTAGGACTT GCTGGAAAAA CAATGCTGCA CCGATTTATT 
AATCCTTCTC AATTAATTTC TATACTTGGT ATTACCAGCT TAAGATCAGA ACAAAGCCAA 
GAACAAGAAA AGCAAAAACG TTCTAAAGCC CTAGCTCAAA CTCAAGTTAA TCGTCAATTC 
TTAACAGAAC ATGGATTAGG TGTACCTCCA AGTATGCGTG ATGAAGCCGA TCAGTTTGTG 
GTTTCTCCAA CAAACTGGGC TGGGATAATA GATCAAGCAT TAGCACCACC TAGAACACGT 
AAAAATTATC AAAAAGCGAT GGTTGCTATC TCTGGTACGA AAGCGATCAT TGAAACAAGA 
TCATCGAAAA ACATAATGAC TGTTGATGAT CTAATGACTT TATTTGCGTT ATTTACATTG 
ACCGTTCAGT ATCATGATCA TCATCAAGAT GATTACCATA TTCAAACGAA AACGATGGGA 
AATAAAACCC CAATCTACAT CACTGATATT TTAACATTAC GTGGTAAGAA GGACTCAGGA 
CCAGCACGTG ACTCTATTCG TGAAAGTATT GATCGAATTG AATTTACTGA TTTCCAACTT 
CATGAATTAA CAGGACGTTG GTTAAGTGAA AATATGCCAA AAGGCTTTAA AAGTGATCGT 
TTTAGATTTT TAGCGAGAAC AATTACAGCC TCAGATGAAG CGCCAAAAGA AGGTAAAGAC 
GGTGAGATTA AGATCAAACC TAATTTATAT ATCTTGGTAT GGGAACCGTC ATTTTATGAT 
GAATTATTAA CGAAAGATTA CTTCTTTTTG TTTCCACCAG AGATTCTAAA GCAACATACG 
TTGGTCTTTC AGCTCTATAG CTTCTTCAGA AGCCGTCTGG CACGTAGAAT GACAGACAAC 
CTACTCCTGA GTGAGATAAA CCAAAAACTC GCTCGTAACG TCGATTGGAG ACGTTTCTCG 
TTAGATCTTA TTCGTGAATT AAAAAAATTA GCAAAAGATA AAGTAACGGA TGAGTTATTT 
ATTGTTAATT TATGGGGCTA TCATTTGACG ATCACTATGC TGGATCCTTC AGATAAATTG 
CCTGATTACC AAGTTGATAT TCGATGTGAT CCTGAAGAAG TGATCCGTTT TTCCCGTGCT 
CGAACGACAA ATGCAGGAAA ACGTAACATG GCGCCAACAA TGCCAAACCC ATTACGTAAC 
GAGATCATGC CAAAACAAGC CCTTGATCAG CTTTCCACGA TCATTGATGG CGAGTTTGAA 
CCTATTAAAC GAAATACCCC GAATAAATCT GGTCGATTAG GCCGCCGTGT TAAATTACGT 
AAGCACTCTG CTGAAATTAA TGCAGATGAA TTAACGATAA CGTTGACAAA ATATACGTCA 
GAAGAAGCGC TAGAACGCAG TATAACGGCT TTGTCTGCTA TGACTGGACA CAGTGCTGCA 
TCTATTTCTG AAGAATGTAA GGAGCTTCAA GAGAAGCTTG ATTATATTAA AGTTAGCGGT 
GAGATCTTGC CTTATGAAAC ACTCAGTAAA ACCATTGAGT TTTATAATAA GCAAGATCAT 
GGAAGACATC TTTCGATTGA GAACTTAATT GCGGGTTTAG CGGTTAGGCG TAAGATCTGT 
AAATTGGTGT TTTCTCAGAA CTATGATCAA GATGTATTAC GTGCATTGGA TGAAATGGTA 
GGGTAG 

 

Protein sequence

MNHIKTSEKE KIYIPLPRDH KGGHLFEIPA NLVDWITQYQ HFKGVTKSIL ELMNLISLKG 
FSSPDGLVST TEIIQTTDGH LTRAAIQQRL RTAVSIGLFE QSPVRFEVGL AGKTMLHRFI 
NPSQLISILG ITSLRSEQSQ EQEKQKRSKA LAQTQVNRQF LTEHGLGVPP SMRDEADQFV 
VSPTNWAGII DQALAPPRTR KNYQKAMVAI SGTKAIIETR SSKNIMTVDD LMTLFALFTL 
TVQYHDHHQD DYHIQTKTMG NKTPIYITDI LTLRGKKDSG PARDSIRESI DRIEFTDFQL 
HELTGRWLSE NMPKGFKSDR FRFLARTITA SDEAPKEGKD GEIKIKPNLY ILVWEPSFYD 
ELLTKDYFFL FPPEILKQHT LVFQLYSFFR SRLARRMTDN LLLSEINQKL ARNVDWRRFS 
LDLIRELKKL AKDKVTDELF IVNLWGYHLT ITMLDPSDKL PDYQVDIRCD PEEVIRFSRA 
RTTNAGKRNM APTMPNPLRN EIMPKQALDQ LSTIIDGEFE PIKRNTPNKS GRLGRRVKLR 
KHSAEINADE LTITLTKYTS EEALERSITA LSAMTGHSAA SISEECKELQ EKLDYIKVSG 
EILPYETLSK TIEFYNKQDH GRHLSIENLI AGLAVRRKIC KLVFSQNYDQ DVLRALDEMV 
G