Gene VSAL_I3021 details

Gene Information

• Locus tag: VSAL_I3021
• Symbol: rmlC
• ID: 6989126
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 3272633
• End bp: 3273187
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643381298
• Product: dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase
• Protein accession: YP_002264344
• Protein GI: 209696413
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.474716
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGTGA TTGATACTCG CATTCCCGAT GTGAAAATTA TTGAGCCATC GGTTTTTGGT 
GATGAACGCG GCTTCTTTAT GGAAACCTGG AATCAAGCGA AATTTGAAGA GTTAGTGACT 
GGTAAGCCTA CCCGATTCGT ACAAGATAAC CATTCAAAAT CTAAGAAAGG GATTTTGCGT 
GGCTTGCATT ATCAAACTGA AAACACCCAA GGGAAATTAG TTCGTGTGGT TTCAGGAGAG 
GTGTTTGACG TGGCGGTCGA TATACGTAAA GGCTCTCCAA CGTTTGGTCA GTGGGTTGGC 
GAGTATTTAT CCGCAGAAAA CAAGCGGCAG TTGTGGGTGC CGAAAGGGTT TGCACATGGT 
TTTTATGTAA CGAGTGATGA AGCTGAATTT GTATATAAGT GTACGGATTA TTATAATCCG 
AAAGTTGAAA TATCACTTTT TTGGGCCGAT GAGAGCTTAG CTATAAATTG GCCTCTTTCC 
GGAATTCCCA TGCTTTCTGA AAAAGATATA AATGGAATAA AATTTGAAAA GATAATTAGT 
AATGATTGGG CATGA 

 

Protein sequence

MKVIDTRIPD VKIIEPSVFG DERGFFMETW NQAKFEELVT GKPTRFVQDN HSKSKKGILR 
GLHYQTENTQ GKLVRVVSGE VFDVAVDIRK GSPTFGQWVG EYLSAENKRQ LWVPKGFAHG 
FYVTSDEAEF VYKCTDYYNP KVEISLFWAD ESLAINWPLS GIPMLSEKDI NGIKFEKIIS 
NDWA