| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I3010 |
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| Symbol | neuD |
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| ID | 6988023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 3260889 |
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| End bp | 3261512 |
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| Gene Length | 624 bp |
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| Protein Length | 207 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643381288 |
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| Product | putative capsular polysaccharide biosynthesis protein NeuD |
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| Protein accession | YP_002264334 |
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| Protein GI | 209696403 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1045] Serine acetyltransferase |
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| TIGRFAM ID | [TIGR03570] sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.118792 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAAGA AACTATTAAT CATAGGCGCA GGTGGTTTTG CTAAATCGAT AATCGATAGT
ATCAACCATA CCGAAGTAGA ACTAGTTGGT TTTATTGATA CTTATAAGCA AGGTTATCAT
CAGGATTATC CGATTATTGC TAACGATATT AATGGAATAT TGAATCCTGA CAATTACGTA
TATTTCATAG GAGTGGGCGA ACCTCATTCT CGTTACAACT TCCTTCATTT ACTAAAAGAA
AAGCAACTTA AACTCATTAA TATTATTGAC TCTAGTGCGA TGGTCTCCCG CAATGTTGAA
TTAGGTGAAG GCATTTATAT TGGTAAAATG TGCATCATTA ATAGTGATTC AAGATTACAA
GATGGCGTAG TCGTTAACAC CCGCTCTTTG ATTGAGCATG GTAATGTAAT TGGTTGCTGC
ACAAATATAT CAACGAATGT CGTACTTAAT GGTGATGTTG TAGTCGGCGA TAGAACCTTC
GTGGGAAGCT GCACTGTAGT GAATGGGCAA ATTACAATTG GTTCTCAGAG CATCATCGGT
TCAGGTTCGG TCGTAATTCG GAACATTAAC GATAAGATTG TTGTTGCGGG TTCTCCTACG
CATTTAATTC GAGAAATCGT TTAA
|
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| Protein sequence | MKKKLLIIGA GGFAKSIIDS INHTEVELVG FIDTYKQGYH QDYPIIANDI NGILNPDNYV
YFIGVGEPHS RYNFLHLLKE KQLKLINIID SSAMVSRNVE LGEGIYIGKM CIINSDSRLQ
DGVVVNTRSL IEHGNVIGCC TNISTNVVLN GDVVVGDRTF VGSCTVVNGQ ITIGSQSIIG
SGSVVIRNIN DKIVVAGSPT HLIREIV
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