Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2992 |
Symbol | |
ID | 6988012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 3242186 |
End bp | 3243391 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643381269 |
Product | MFS transporter |
Protein accession | YP_002264317 |
Protein GI | 209696386 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACACGC CAAGCTCAAG ACCATCAGAT AAAAAATTGA TCACCCTTAT GGTGATGCTC GTTTTATTCA GTCCGTTAGC GATTGATATT TATCTGCCTG CATTACCGAT GATGGTAAGC GAATTCCAAG TTGCATCAAC ATTAGGACAA GACACGATAA CGTGGTTCAT GTTCAGTATG GGATTAGGCC AATTGTTTGC TGGTCCATTA GCGGATCGTT ATGGCCGTCG TCCTATCGCT CTTACTGGTA TTGTTATTTA TGGTTTGAGT GCGGCATTAG CGTATTCAGC TCAAGAAATG GAAATGCTGT TGTTGGCTCG TTTACTTCAA GGTTTTGGTG CCTGTGCGAC TTCTGTTGCG GCGTTCGCAT CAGTACGAGA CTCATTTGGT GCAGAGAAGA GTGGTCGAAT GATCAGTTAT TTGAATGGCG CGATTTGTTT TATTCCTGCG TTAGCACCAA TTTTAGGCAG TTATTTAACG ATGCATTTTG GTTGGCGTTC AAACTTCAGT TTCATGGCAG GGTTTGCATT AGTTAGTTTT GTGATTATCG CGTTGAACTA TAAAGAAACA AAACCATCAA ATACCTTACA AACAGGGCGA TTGATCAGTC CATCTCGTTA TTGGTCAGTG CTAAAGCATC CCGCCTTTTT GTTCCATGCG ACATTATGTA TGTTAGCGAT GGGCGTCATT TTAGCGTATG TGACATCGGC ACCGGTATTA CTGATGGATA AACTTGGGCT TACAATGCAA GAGTTTACCA ATTGGTTTGC GGTGAATGCG GTACTAAATA TCATGGCATG TTTTGCTGCA CCAAAATTCA TGATCAAATT CGGAACTCGT AATGCATTAC TTTTCGGCCT CAGTATTTTA GTGGTTGCCG GTGGGTTAAT GTTAGGGTTC CAACATATTC AGCAAGCTTG GGCGTTTATG ATCCCGATTT TCTTCTCGTC AGTAGGCTTC GCATGGGTAC TGGGTTCGGC GGCAGGTAAG GCACTAGCAC CATTCGGTGA TAGAGCAGGA ACTGCGGCAG CATTATTAGG GCTGTTTCAA ATGAGTGGTG CGGGAATCAT TGTTGGCACA ATGCAAAGAT TAGCACTCCC TTCAGCACAA CTCTTAGCAC TAATGATGTG GCTTCTCATC CCAGGCTTGC TGATCCTATT AAGTCGCGTT GGTAAACGAT GGCATTCAGA TCCAATTACT GAATAA
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Protein sequence | MHTPSSRPSD KKLITLMVML VLFSPLAIDI YLPALPMMVS EFQVASTLGQ DTITWFMFSM GLGQLFAGPL ADRYGRRPIA LTGIVIYGLS AALAYSAQEM EMLLLARLLQ GFGACATSVA AFASVRDSFG AEKSGRMISY LNGAICFIPA LAPILGSYLT MHFGWRSNFS FMAGFALVSF VIIALNYKET KPSNTLQTGR LISPSRYWSV LKHPAFLFHA TLCMLAMGVI LAYVTSAPVL LMDKLGLTMQ EFTNWFAVNA VLNIMACFAA PKFMIKFGTR NALLFGLSIL VVAGGLMLGF QHIQQAWAFM IPIFFSSVGF AWVLGSAAGK ALAPFGDRAG TAAALLGLFQ MSGAGIIVGT MQRLALPSAQ LLALMMWLLI PGLLILLSRV GKRWHSDPIT E
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