| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2985 |
|---|
| Symbol | thiF |
|---|
| ID | 6989282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 3233468 |
|---|
| End bp | 3234316 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643381262 |
|---|
| Product | thiamine biosynthesis adenylyltransferase ThiF |
|---|
| Protein accession | YP_002264310 |
|---|
| Protein GI | 209696379 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0476] Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATT TATTGATGGA AGGATTAAAT GATCAAGATT TCCTTCGTTA TAGCCGACAA
ATCATGTTGC CTGATATTGG TGAGCGAGGA CAATTGTCTC TTCGAAATAG CACCGTGCTA
ATGGTTGGCT GCGGAGGATT GGGATCATCT GTTGGAATGT ATTTGGCTGC CGCTGGCGTG
GGAACGTTGA TTATTGCCGA TGGCGATGAC GTTGATCTTA GTAACTTACA GAGGCAAGTG
GTTTATCGTG AGCAGAGTAT AAAACAGAAT AAAGCGTTAG CGATGGCTCA AGAACTGCAA
TCAATCAACA AGACGATCAC GATTGAGGTG ATAACGAAGC ATCTAACAGA ACCTGCGCTT
TCTCGATTCA TTACTCAGGT AGATGTTGTT CTGGATTGCA CTGATAACTT AACAACACGC
CACAATATTA ATGCCGCCTG TGTTCAACAT CAGGTGCCTT TAATTTCTGG CGCGGCGATT
GGTTGGCAAG GGCAATTGAT GTTGTTTTCA AATAAGAGTG ATGAGTTAGG TAACACATCG
TCGTCTTGTT ATCACTGTCT GTTCCCTTTT ATTGAAAGCC AACAAACGAA GAACTGTCAA
TCTTTCGGAA TTGTTGGGCC AGTGGTTGGC ATGATAGGTA ATCTACAAGC CTTAGAGACA
ATTAAGTATC TAACGCAACC TGAGTGGATG ACATGGAGTT CACTGCATCA ATTTAATGGT
AAGTCATTAT CTTGGTCGAC GATGGGTATT CCCAAAGACC ATTGTTGTCC TGTCTGTCAG
TCACCAAGTG ATTTGCAAGA TGTTTCACGT GAAACACATC ATAAAGAGAG AGAATCGGTC
AGTGAATAA
|
|---|
| Protein sequence | MSNLLMEGLN DQDFLRYSRQ IMLPDIGERG QLSLRNSTVL MVGCGGLGSS VGMYLAAAGV
GTLIIADGDD VDLSNLQRQV VYREQSIKQN KALAMAQELQ SINKTITIEV ITKHLTEPAL
SRFITQVDVV LDCTDNLTTR HNINAACVQH QVPLISGAAI GWQGQLMLFS NKSDELGNTS
SSCYHCLFPF IESQQTKNCQ SFGIVGPVVG MIGNLQALET IKYLTQPEWM TWSSLHQFNG
KSLSWSTMGI PKDHCCPVCQ SPSDLQDVSR ETHHKERESV SE
|
|---|
| |