Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2965 |
Symbol | glyS |
ID | 6988610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 3209940 |
End bp | 3212006 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643381240 |
Product | glycyl-tRNA synthetase subunit beta |
Protein accession | YP_002264290 |
Protein GI | 209696359 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.425514 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAAGA ATTTTCTAAT CGAATTAGGT ACAGAAGAGC TTCCACCGAA AGCACTTCGT TCATTAGCTG AAGCGTTTGC TGCAAATTTT GAAGCCGGCC TTAAAGCGGC TGGTTTAGCT CATCAAGGCA TTAAGTGGTA TGCAACGCCT CGTCGTTTAG CGCTTAAAAT CGCTGAATTA GATGAAGGCC AAGCAGACAA AATCGTTGAA AAGCGTGGTC CTGCAATCGC TTCTGCATTT GATGCTGACG GTAATCCAAC TAAAGCAGCT CAAGGCTGGG CTCGTGGTAA CGGTATTACG GTTGAGCAGG CTGAGCGTCT AAAAACAGAC AAAGGCGAAT GGCTACTTCA TAAAGAAGAA GTAAAAGGCC AACCGGTTAA AGGACTTGTT GTTGAATTAG CAGCAAAAGC CCTGGCTGGT TTACCAATTC CTAAAGCAAT GCGTTGGGGT AACTCAGACA TTCAATTTAT TCGTCCAGTG AAAACACTGA CAATCCTATT GGGTGACGAA CTGATTGAAG GCACTATCTT AGGTGTTGCT TCTACTCGTA CTATCCGTGG CCACCGTTTC ATGGGTGAAA GCGAGTTTAC GATTGATTCT GCTGACCAAT ACCCTGCGAT CTTAGAAGAA CGCGGTAAAG TAATGGCTGA CTACGATGCG CGTAAAGCCA TCATCCTTGC TGGTGCTAAA AAAGCAGCAG AAGCGGTTGG CGGTATTGCG GATCTAGAAG ACGAATTAGT TGAAGAAGTT ACGTCTCTTG TTGAATGGCC AGTGGTATTG ACCGCTAAGT TTGAGCAAGA GTTCTTGAAT GTTCCTTCTG AAGCGTTGGT TTACACAATG AAGGGCGATC AAAAGTACTT CCCTGTGTAC GACCAAGAGA AGAACCTACT TCCTAACTTC ATCTTTGTTA CTAACATCGA ATCTAAAGAA CCTCGTCATA TTATCGAAGG TAATGAGAAA GTGGTTCGCC CACGTCTTGC TGATGCTGAA TTCTTCTTCA ATACAGACCG TAAGCGCCCG CTTATCGATC GTCTGCCAGA ACTAGAACAA GCAATATTCC AGAAGCAATT GGGCACAATC AAAGACAAAA CAGACCGTAT TACTGAACTT GCTGGCTACA TCGCTGAGCA AATTGGTGCG GACGTTGAGA AATCGCAACG TGCAGGTCTT TTAGCTAAGT GTGACTTAAT GACCTCAATG GTATTTGAAT TTACAGATAC TCAAGGTGTT ATGGGTATGC ACTACGCAAC TCATGATGGT GAAGATGCAC AAGTCGCATT AGCGCTTTAC GAGCAATACA TGCCTCGTTT CGCGGGTGAT GACTTACCAA GTACCGATGT TTCTGCATCA GTAGCAATGG CAGATAAGCT AGATACGCTA GTGGGTATCT TCGGCATTGG TCAAGCTCCT AAGGGGTCTG ATCCATTTGC ACTTCGTCGT GCTGCGTTAG GTATCTTACG TATCATCGTT GAAAAAGGGT ACAACTTAGA TTTAGTTGAC CTTGTTGCTA AAGCACAATC TTTGTTTGGC GATAAATTAA CGAATGCAAA CGTAGACACT GATGTGATTG ATTTCATGTT AGGCCGTTTC CGTGCATGGT ATCAAGATGA AGGTTTCAGC GTAGATATCA TCCAAGCGGT ACTTGCTCGT CGTCCAACCA AGCCTGCTGA TTTTGATCAA CGTGTGAAAG CGGTATCTCA CTTCCGTGAA TTAGACGCGG CTGAGTCTCT AGCGGCAGCG AATAAGCGCG TAGGTAATAT CCTGGCGAAA TTCGATGGCG AACTGGCTCA AGAAATCGAT CTAGCTCTTC TTCAAGAAGA CGCTGAGAAA GTATTGGCTG AGAAAGTTGA AATTCTAGCA GAAGCACTAG AGCCAGTATT TATTGCTGGT AATTATCAAG AAGCATTAAG CCGCCTAGCT GAGCTACGTG AGCCTGTCGA TGCGTTCTTT GATGGTGTAA TGGTAATGGC TGACGATGAG GCGCTTAAGC TGAATCGTCT AACTTTGCTG AATAAGCTAC GTAACTTATT CTTAGATATT GCTGATATTT CTCTTCTTCA AAAATAG
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Protein sequence | MAKNFLIELG TEELPPKALR SLAEAFAANF EAGLKAAGLA HQGIKWYATP RRLALKIAEL DEGQADKIVE KRGPAIASAF DADGNPTKAA QGWARGNGIT VEQAERLKTD KGEWLLHKEE VKGQPVKGLV VELAAKALAG LPIPKAMRWG NSDIQFIRPV KTLTILLGDE LIEGTILGVA STRTIRGHRF MGESEFTIDS ADQYPAILEE RGKVMADYDA RKAIILAGAK KAAEAVGGIA DLEDELVEEV TSLVEWPVVL TAKFEQEFLN VPSEALVYTM KGDQKYFPVY DQEKNLLPNF IFVTNIESKE PRHIIEGNEK VVRPRLADAE FFFNTDRKRP LIDRLPELEQ AIFQKQLGTI KDKTDRITEL AGYIAEQIGA DVEKSQRAGL LAKCDLMTSM VFEFTDTQGV MGMHYATHDG EDAQVALALY EQYMPRFAGD DLPSTDVSAS VAMADKLDTL VGIFGIGQAP KGSDPFALRR AALGILRIIV EKGYNLDLVD LVAKAQSLFG DKLTNANVDT DVIDFMLGRF RAWYQDEGFS VDIIQAVLAR RPTKPADFDQ RVKAVSHFRE LDAAESLAAA NKRVGNILAK FDGELAQEID LALLQEDAEK VLAEKVEILA EALEPVFIAG NYQEALSRLA ELREPVDAFF DGVMVMADDE ALKLNRLTLL NKLRNLFLDI ADISLLQK
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