Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2924 |
Symbol | epsD |
ID | 6988447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 3166415 |
End bp | 3168442 |
Gene Length | 2028 bp |
Protein Length | 675 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643381203 |
Product | general secretion pathway protein D |
Protein accession | YP_002264253 |
Protein GI | 209696322 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGGCAAGG GAGCCTTATT ACTGGCGAGT AGCATGGTGT GGACATCAGC TATCGCCAAT GACTTTAGTG CCAGTTTTAA AGGGACGGAT ATTCAAGAGT TCATCAACAT TGTTGGTCGA AATTTGGAAA AAACCATTAT TGTTGATCCT TCAGTACGCG GAAAAGTGGA TGTTCGTAGC TACGATTTAT TGAATGAAGA ACAATATTAT CAATTCTTTT TAAGTGTCCT TGAAGTCTAT GGCTACGCGG TCGTTGAAAT GGATTCTGGT ATTTTAAAAG TCATTAAAGA TAAAGATGCG AAAACGTCGG CAGTTCCTGT TCTGGGAGCA AAAGATAACA TAACGGGTGA TGCGGTAATT ACTCGTGTTA TTGCGGTTCG TAATGTCTCT GTACGTGAGC TTTCACCTTT ATTACGTCAG CTGAATGATA ATGCGGGCGC GGGTAATGTG GTTCATTACG ATCCGGCGAA CATTATTATG ATCACGGGTC GTGCGGCGGT GGTTAATCGC CTTGCTGAGA TTATTGAACG AGTCGATCAG GCGGGTGATA AAGAAGTTGA AGTGGTTGAG CTTAAAAATG CATCGGCGGC CGAGATGGTT CGTATTGTTG ATGCTTTGAA TAAAACAACG GAAGCAAAAA ACACTCCGGC TTTCTTACAA CCAAAATTGG TTGCCGATGA GCGAACTAAC TCAGTATTAA TTTCTGGGGA TCCTAAAGTT CGCCAACGAT TGAAAAAATT AATTAAGCAA CTTGATGTAG AAATGGCAAC GAAAGGCAAT AACCAAGTGG TTTACTTACG CTATGCCAAA GCAGAAGATT TAGTTGATGT GCTTAAAGGG GTTTCTGACA ATCTAGAAGC CGGTAAAGGA AGTGGCAAGC AATCGGGTTC AAGTAATCGT GGTAATGTCA TGATTTCAGC TCATGCGGAT ACTAATGCGA TCATTATCAC TGCACCGCCA GATATTATGC GTGCAGTGAA AGATGTGATT GCTCAATTAG ATATCCGTCG TGCTCAAGTA TTAATTGAAG CGCTGATAGT CGAAATGGCG GAAGGTGATG GCGTTAATCT TGGTGTGCAA TGGGGTAATT TAAAAACCGG TGCAATGATC CAATACAGCA ATACGGGGGC CTCAATTGGC GGCACCATGG TGGGCTTAGA AGAAGCTAAA GACAGCACCA CGACAACCGC TGTTTATGAT AGCGATGATA ATTTCCAAAG AAATGAAACC ACAACAGAAG AGGGTGATTA CGGTGCACTT GCTTCTGCGC TTGGTGGTGT TCAAGGCGCG GCGGTTAGTA TTATGATGGG GGATTGGACT GCGTTGATAA CGGCGGTATC GACTGATTCG AATTCAAATA TTCTGTCATC ACCAAGTATT ACTGTCATGG ATAATGGTGA AGCGTCATTT ATTGTCGGTG AAGAAGTTCC TGTATTAACA GGGTCTACCT CTGGTTCAAA TAACGAGAAC CCATTCCAAA CCGTTGAACG TAAAGAAGTG GGTATTAAGC TTAAGGTGGT CCCTCAGATT AATGAAGGGA ACTCGGTTCG TTTGGATATT GAACAAGAAG TGTCTAATGT ATTGGGTGCG AATGGGGCGG TTGATGTTCG TTTTGCTAAG CGCCAGTTAA GTACGTCGGT CATGGTAGAA GATGGCAAAA TGTTAGTACT GGGTGGTTTG ATTGATGAAC GAGCGATGGA AAGTGAATCA AAAGTTCCAT TCCTTGGTGA TATTCCGATT TTAGGCTATT TATTCAAATC AACCAGCACT CAAGTTGAAA AGAAAAATTT AATGATATTC ATTAAACCAA CCATTATTCG TGATGGCATG ACATCGGATG GTATTACTCA GCGTAAATAC AATTATATTC GTGCAGAGCA ACTATATAAT GCACAGAAAG GCTTGAAGTT TATGGATGAT ACGAATATTC CGGTGTTACC AACATTTGAT GAAGGCATAA AACACCCCGC TGAAATTCAA GCGTTCTTTG AACAGTTTGA TGATGAACAT AAGGATAAGG GAAAATAA
|
Protein sequence | MGKGALLLAS SMVWTSAIAN DFSASFKGTD IQEFINIVGR NLEKTIIVDP SVRGKVDVRS YDLLNEEQYY QFFLSVLEVY GYAVVEMDSG ILKVIKDKDA KTSAVPVLGA KDNITGDAVI TRVIAVRNVS VRELSPLLRQ LNDNAGAGNV VHYDPANIIM ITGRAAVVNR LAEIIERVDQ AGDKEVEVVE LKNASAAEMV RIVDALNKTT EAKNTPAFLQ PKLVADERTN SVLISGDPKV RQRLKKLIKQ LDVEMATKGN NQVVYLRYAK AEDLVDVLKG VSDNLEAGKG SGKQSGSSNR GNVMISAHAD TNAIIITAPP DIMRAVKDVI AQLDIRRAQV LIEALIVEMA EGDGVNLGVQ WGNLKTGAMI QYSNTGASIG GTMVGLEEAK DSTTTTAVYD SDDNFQRNET TTEEGDYGAL ASALGGVQGA AVSIMMGDWT ALITAVSTDS NSNILSSPSI TVMDNGEASF IVGEEVPVLT GSTSGSNNEN PFQTVERKEV GIKLKVVPQI NEGNSVRLDI EQEVSNVLGA NGAVDVRFAK RQLSTSVMVE DGKMLVLGGL IDERAMESES KVPFLGDIPI LGYLFKSTST QVEKKNLMIF IKPTIIRDGM TSDGITQRKY NYIRAEQLYN AQKGLKFMDD TNIPVLPTFD EGIKHPAEIQ AFFEQFDDEH KDKGK
|
| |