| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2918 |
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| Symbol | epsJ |
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| ID | 6988453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3161538 |
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| End bp | 3162185 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643381197 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_002264247 |
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| Protein GI | 209696316 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATAAAC GATCTCGAGG TTTTACGCTG ATCGAGGTGA TGGTCGCTAT CTCTGTATTT
GCCACATTAA GTTTTTCGGC GTATCAAGTG GTGAATCAAG TACAGCGCAG TAATGCTCTC
TCTTTGGAAA AAAGTGAACG AATTAAAGAA TTACAGCGCA GTTTGGTTTT TCTTGATAAT
GACTTTCGCC AAATTGTGGC GCGTCAATTC AGAAGCAATG GAGAAAAAGC AGATGGAAAG
TTAATTTCAG CCGATGACTA TTTATTGGAT TCAGAATCTC AAGGTATTTT GTTTGTTCGT
TTAGGTTGGA AAAATCCACA GGAAGCCTTC CCGCGAGGTG AGATCACCAA AGTGGGCTAT
CGCGTCGTTG AAAATAAACT TGAACGTTTA TGGTGGCGTT ATCCTGATAC CCCTGTTGGT
CAAAAGCCAG TGGTTACGCC ATTAATCGAT GGCGTCGAAG AGATTAAATT TGAATTTTAT
GACGGTAAAA CATGGCAAAA GAAATGGCAG AAAAAGAATG AGCTGCCATT TGCTATTAAG
CTTCTTATCG TGTTTGAAGA TTATGGGGAT GTAGATCGAA TTTATCTTAC GTCAGGTTAT
CAATTGGATG AAAGCAACAA AAATGACGAT GAGTCCAAGG GCGGTTAA
|
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| Protein sequence | MNKRSRGFTL IEVMVAISVF ATLSFSAYQV VNQVQRSNAL SLEKSERIKE LQRSLVFLDN
DFRQIVARQF RSNGEKADGK LISADDYLLD SESQGILFVR LGWKNPQEAF PRGEITKVGY
RVVENKLERL WWRYPDTPVG QKPVVTPLID GVEEIKFEFY DGKTWQKKWQ KKNELPFAIK
LLIVFEDYGD VDRIYLTSGY QLDESNKNDD ESKGG
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