Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2918 |
Symbol | epsJ |
ID | 6988453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 3161538 |
End bp | 3162185 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643381197 |
Product | general secretion pathway protein J |
Protein accession | YP_002264247 |
Protein GI | 209696316 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4795] Type II secretory pathway, component PulJ |
TIGRFAM ID | [TIGR01711] general secretion pathway protein J [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATAAAC GATCTCGAGG TTTTACGCTG ATCGAGGTGA TGGTCGCTAT CTCTGTATTT GCCACATTAA GTTTTTCGGC GTATCAAGTG GTGAATCAAG TACAGCGCAG TAATGCTCTC TCTTTGGAAA AAAGTGAACG AATTAAAGAA TTACAGCGCA GTTTGGTTTT TCTTGATAAT GACTTTCGCC AAATTGTGGC GCGTCAATTC AGAAGCAATG GAGAAAAAGC AGATGGAAAG TTAATTTCAG CCGATGACTA TTTATTGGAT TCAGAATCTC AAGGTATTTT GTTTGTTCGT TTAGGTTGGA AAAATCCACA GGAAGCCTTC CCGCGAGGTG AGATCACCAA AGTGGGCTAT CGCGTCGTTG AAAATAAACT TGAACGTTTA TGGTGGCGTT ATCCTGATAC CCCTGTTGGT CAAAAGCCAG TGGTTACGCC ATTAATCGAT GGCGTCGAAG AGATTAAATT TGAATTTTAT GACGGTAAAA CATGGCAAAA GAAATGGCAG AAAAAGAATG AGCTGCCATT TGCTATTAAG CTTCTTATCG TGTTTGAAGA TTATGGGGAT GTAGATCGAA TTTATCTTAC GTCAGGTTAT CAATTGGATG AAAGCAACAA AAATGACGAT GAGTCCAAGG GCGGTTAA
|
Protein sequence | MNKRSRGFTL IEVMVAISVF ATLSFSAYQV VNQVQRSNAL SLEKSERIKE LQRSLVFLDN DFRQIVARQF RSNGEKADGK LISADDYLLD SESQGILFVR LGWKNPQEAF PRGEITKVGY RVVENKLERL WWRYPDTPVG QKPVVTPLID GVEEIKFEFY DGKTWQKKWQ KKNELPFAIK LLIVFEDYGD VDRIYLTSGY QLDESNKNDD ESKGG
|
| |