Gene VSAL_I2918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I2918 
SymbolepsJ 
ID6988453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp3161538 
End bp3162185 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content40% 
IMG OID643381197 
Productgeneral secretion pathway protein J 
Protein accessionYP_002264247 
Protein GI209696316 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4795] Type II secretory pathway, component PulJ 
TIGRFAM ID[TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAC GATCTCGAGG TTTTACGCTG ATCGAGGTGA TGGTCGCTAT CTCTGTATTT 
GCCACATTAA GTTTTTCGGC GTATCAAGTG GTGAATCAAG TACAGCGCAG TAATGCTCTC
TCTTTGGAAA AAAGTGAACG AATTAAAGAA TTACAGCGCA GTTTGGTTTT TCTTGATAAT
GACTTTCGCC AAATTGTGGC GCGTCAATTC AGAAGCAATG GAGAAAAAGC AGATGGAAAG
TTAATTTCAG CCGATGACTA TTTATTGGAT TCAGAATCTC AAGGTATTTT GTTTGTTCGT
TTAGGTTGGA AAAATCCACA GGAAGCCTTC CCGCGAGGTG AGATCACCAA AGTGGGCTAT
CGCGTCGTTG AAAATAAACT TGAACGTTTA TGGTGGCGTT ATCCTGATAC CCCTGTTGGT
CAAAAGCCAG TGGTTACGCC ATTAATCGAT GGCGTCGAAG AGATTAAATT TGAATTTTAT
GACGGTAAAA CATGGCAAAA GAAATGGCAG AAAAAGAATG AGCTGCCATT TGCTATTAAG
CTTCTTATCG TGTTTGAAGA TTATGGGGAT GTAGATCGAA TTTATCTTAC GTCAGGTTAT
CAATTGGATG AAAGCAACAA AAATGACGAT GAGTCCAAGG GCGGTTAA
 
Protein sequence
MNKRSRGFTL IEVMVAISVF ATLSFSAYQV VNQVQRSNAL SLEKSERIKE LQRSLVFLDN 
DFRQIVARQF RSNGEKADGK LISADDYLLD SESQGILFVR LGWKNPQEAF PRGEITKVGY
RVVENKLERL WWRYPDTPVG QKPVVTPLID GVEEIKFEFY DGKTWQKKWQ KKNELPFAIK
LLIVFEDYGD VDRIYLTSGY QLDESNKNDD ESKGG