| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2900 |
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| Symbol | rpoH |
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| ID | 6988600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3145988 |
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| End bp | 3146848 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643381180 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_002264230 |
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| Protein GI | 209696299 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0400312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAAAG AGATGTATTC AATGGCTGTC GTTTCTCAAG ATAGCATCGA TAGCTATCTA
CGTTCTGTTA ATCGTTACCC GATGTTAACG GTTGAGAAAG AACGCGATCT TGCTGAACGT
CTACACTACA AAGAAGAAAT AGAGGCGGCA AAAGAGCTGA TTTTATCTCA TCTACGCTTC
GTTGTTCATG TCGCTCGTGG ATATTCTGGT TATGGCTTAC CTTTGGCGGA TCTTATCCAA
GAAGGTAATG TTGGTTTGAT GAAAGCAGTA AAACGATTTA ACCCTGAAGT GGGTGTTCGT
TTGGTTTCAT TTGCAGTGCA TTGGATTAAA GCTGAAATTC ATGAATACGT ATTAAGAAAC
TGGCGTATCG TGAAAGTAGC AACAACCAAA GCGCAGCGTA AACTGTTCTT CAATCTTAGA
AAGAATAAAA AACGTCTTGG TTGGTTTAAT AATGGCGAAG TTGAAGCCGT TGCTAAAGAC
TTAGGTGTAT CGCCTTCTGA AGTTAGAGAG ATGGAATCCC GTCTTGCAGC TCAAGATTCA
ACGTTTGAAG CTCCAACCGA AGATGACGAC CGTGATATGG CGTTTACCGC TCCTGTTTAT
TACTTAGAAG ATAAGCAGTC AGATATTGCT CATTCATTAG AAGAAGATAA TTGGGAAGAT
TACACCAATA ATCGTTTGGC TAATGCGATA GCAACGTTAG ATGACCGCAG TCAACATATT
GTTCAATCTC GTTGGTTAAC TGATGAGAAG ACGACGTTGC AAGAGTTAGC TAACACTTAC
TCTGTGTCTG CTGAGCGAAT TCGTCAGCTT GAAAAGAACG CGATGAAAAA ATTAAAAGAT
GCTGTAGGAG ATATATTCTA A
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| Protein sequence | MSKEMYSMAV VSQDSIDSYL RSVNRYPMLT VEKERDLAER LHYKEEIEAA KELILSHLRF
VVHVARGYSG YGLPLADLIQ EGNVGLMKAV KRFNPEVGVR LVSFAVHWIK AEIHEYVLRN
WRIVKVATTK AQRKLFFNLR KNKKRLGWFN NGEVEAVAKD LGVSPSEVRE MESRLAAQDS
TFEAPTEDDD RDMAFTAPVY YLEDKQSDIA HSLEEDNWED YTNNRLANAI ATLDDRSQHI
VQSRWLTDEK TTLQELANTY SVSAERIRQL EKNAMKKLKD AVGDIF
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