Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2898 |
Symbol | |
ID | 6987965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 3144389 |
End bp | 3145228 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643381178 |
Product | integral membrane protein |
Protein accession | YP_002264228 |
Protein GI | 209696297 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.345638 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCATCGAT TGATCGCGTT ATCAAATCCA AGAGCTGGTC AGGCCTTTAT TGATTATATG GCTTCACGTC ATATTGATCT TCGTATGATG CCAGAAGGGG AAGGCCAGTT TGCGTTATGG GTAGTGTCTG ATGATACTTA TCTATTGGAA GTTGAATCGG AACTACAAGC GTTTTTAAAA GATCCTAATG CGACAAAATA TCAATCAGCA TCATGGGATA TGGCGGATAC TCGTACTGCT AAATTTTCTT ATTCTTCACC CAATATTATG AAGATGGTAA AAGCCAAAGC CGGTGTGTTT ACGTTATTCA TCATGGTGAG CTGTATTGTT ATTTTTGCTT TGCAGCAATT TGGTTGGAAT AATTCAGTCT TTCAATTATT GCACTTCCCT GAAAACCAAG GGCAAAGCAT TGAGATATGG CGTTGGTTCT CTCATGCGTT ACTTCACTTT TCAGCTACTC ACATTATTTT TAATTTATTG TGGTGGTGGC AGCTTGGTGG AGACATTGAA TTACGTTTAG GTCGAACAAA ACTGGTTCAA TTGTTCTTGT TTTCTGCTTT ATTTTCAGGA CTTGGACAGT TTTGGATAGA TGGTGCTAAC TTTGGTGGTC TATCTGGTGT TGTGTATGCG TTATTAGGCT ATTCGTGGTT TATTGGTTGG TTGGCTCCTG AAAGAGGTAT CTCAGTGTCT AAACCTATCG TAGGGTTTAT GCTGATATGG ATCATTCTTG GGTATGTTCA GCCTTTTATG GCGATTGCGA ATACTGCACA TTTAGTGGGA TTGATAACCG GTTGTGCTTT TGCAGCAATT GACAGTCAAT TCAAGTTTAA AAAAGCGTAA
|
Protein sequence | MHRLIALSNP RAGQAFIDYM ASRHIDLRMM PEGEGQFALW VVSDDTYLLE VESELQAFLK DPNATKYQSA SWDMADTRTA KFSYSSPNIM KMVKAKAGVF TLFIMVSCIV IFALQQFGWN NSVFQLLHFP ENQGQSIEIW RWFSHALLHF SATHIIFNLL WWWQLGGDIE LRLGRTKLVQ LFLFSALFSG LGQFWIDGAN FGGLSGVVYA LLGYSWFIGW LAPERGISVS KPIVGFMLIW IILGYVQPFM AIANTAHLVG LITGCAFAAI DSQFKFKKA
|
| |