Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2866 |
Symbol | rpoB |
ID | 6989181 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 3104688 |
End bp | 3108716 |
Gene Length | 4029 bp |
Protein Length | 1342 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643381139 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_002264196 |
Protein GI | 209696266 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.131495 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTTACT CTTATACAGA GAAAAAGCGC ATCCGTAAGG ATTTTGGTAA GCGTCCACAA GTGTTGGACA TACCATACTT ACTATCGATC CAGCTTGATT CTTTTACTAA ATTTATCGAG CAAGATCCTG AAGGGCAATA CGGTCTTGAG GCTGCTTTCC GTTCTGTTTT TCCAATTCAG AGCTACAATG GCAACTCTAA GCTAGAATAC GTTAGCTATA ATCTCCGTGA GCCAGAATTT GATGTTAAAG AATGTCAAAT CCGCGGTGTT ACCTATTCTG CACCTTTACG CGTTAAATTA CGTTTAGTTG TGTACGATAA AGATGCACCT GCAGGCACGG TAAAAGACAT TAAAGAACAA GAAGTCTACA TGGGCGAAAT TCCGCTTATG ACTGACAACG GTACTTTTGT AATCAATGGT ACTGAAAGGG TTATCGTATC CCAGCTGCAC CGCAGCCCAG GTGTCTTCTT CGACAGCGAT AAGGGTAAAA CCCATTCATC TGGTAAAGTT CTTTATAACG CGCGTGTAAT TCCTTACCGT GGTTCATGGT TAGATTTCGA ATTTGATCCT AAGGATAACT TATTCGTACG TATCGACCGT CGTCGTAAAT TACCAGCAAC GATCATCTTA CGTGCACTTC GTAAAACAAC AGAAGAAATC TTAGATCTAT TCTTCGATAA AGTTGTATTT GAAGTGAAAG ACCAAACGTT AATGATGGAA TTACTTCCTG AACGTTTACG TGGTGAGACT GCAACATTTG ATATTGAATC GAACGGCAAA GTTTATGTTG AAGCCGGTCG TCGTATTACT GCGCGTCATA TTCGTCAATT GACGAAAGAC GAAGTAAATA ATATCGAAGT ACCAGTAGAT TATATCGTAG GTAAAGTGGC TTCTCACGAT TATGTGAATG AAGACACTGG TGAGATCATT ATCGCGGCTA ACCAAGAGTT TAGCTTAGAA GATCTTGCTA ATTTATCTCA AGCTGGCCAC AAAAAGATTG AAGTGTTATT TACGAATGAC CTTGATCATG GTGCATACAT CTCTGACACA TTACGTGCAG ATTCAACTGT TGACCGTTTA TCGGCACTTG TTGAAGTTTA TCGTATGATG CGCCCAGGCG AGCCACCAAC AAAAGAAGCT GCTGAATCAT TATTTGAAAG CCTATTCTTC TCTGAAGATC GTTATGACTT ATCGACTGTT GGTCGTATGA AGTTCAATAG CTCAATTGGT CGTGATAATG GTGAAGGCGC AGGCATCCTT GATGAAACAG ACATCATCGA AGTTATGCGT AAACTGATCG ATATTCGTAA CGGTAAAGGC GAGGTTGATG ATATCGATCA CCTTGGTAAC CGTCGTATTC GTTCTGTTGG CGAAATGGCA GAAAACCAAT TCCGTGTTGG TTTAGTTCGT GTAGAACGTG CTGTTCGTGA ACGTCTAAGT CTTGGTGATC TTGATGCAAT TATGCCTCAA GATCTTATCA ACGCTAAGCC GATTTCAGCT GCAGTTAAAG AATTCTTTGG CTCTTCACAG CTGTCTCAGT TTATGGATCA GAATAACCCA TTGTCAGAAG TTACGCACAA ACGTCGTATT TCTGCTTTAG GGCCTGGCGG TCTAACTCGT GAGCGTGCTG GTTTCGAAGT TCGTGATGTA CACGCGACTC ACTACGGTCG CCTATGTCCA ATCGAAACTC CTGAAGGACC AAACATCGGT CTAATTAACT CATTATCAGC GTATGCTCGA TGTAATGAAT ATGGTTTCCT AGAGACTCCA TATCGTCGTG TTGTTGATAA TATCGTGACT GAAGATGTAG ATTACCTATC TGCGATTGAA GAAGGTACAT TTGTTATTGC ACAGGCGAAT GCCGTGTTAA CAGAAGAAGG TACTTTCGCT GATGAATTAA TCATCGCTCG TCAGAAAGGT GAATCAGGCC TACATCCACG TGAACACATC CAATATATGG ATGTCGCGAC AAACCAAGTT GTATCTGTAG CTGCATCGCT TATCCCGTTC CTAGAACACG ATGATGCGAA CCGTGCCCTA ATGGGTGCGA ACATGCAGCG TCAAGCTGTA CCTACATTAA GAGCTGATAA GCCTTTAGTT GGTACTGGTA TTGAGCGTTG TGTAGCAATC GATTCAGGTG TAACCGCTGT TGCTAAACGT GGCGGTATGG TTCAGTCAGT AGATGCTTCT CGTATCGTTA TCAAAGTGAA CGAAGAAGAA TTGGTACCTG GCGAAGCTGG TATCGATATC TACAACTTAA CTAAATACAC TCGTTCTAAC CAAAATACGT GTATCAACCA ACGTCCAACA GTGCTTCCTG GTGAACCTGT TACTCGTGGT GATGTTCTTG CTGATGGTCC GTCAACGGAT CTTGGTGAGC TTGCACTTGG TCAGAACATG CGTATCGCAT TTATGCCTTG GAATGGTTAT AACTTCGAGG ATTCAATCCT TGTATCTGAG CGTGTAGTTC AGGAAGACCG TTTCACGACG ATTCACATTC AAGAACTATC TTGTGTGGCT CGTGATACTA AACTTGGCTC TGAAGAGATC ACTGCAGATA TCCCTAACGT AGGCGAAGCT GCTCTGTCTA AACTTGATGA ATCAGGTATT GTTTATATCG GTGCTGAAGT TAAGGGTGGA GACATCTTAG TTGGTAAAGT AACACCTAAA GGTGAAACTC AACTGACTCC AGAAGAGAAG CTACTACGAG CTATCTTTGG TGAAAAAGCA TCAGATGTTA AAGATTCTTC TCTACGTGTA CCAAACTCTG TTTCAGGTAC TATCATTGAC GTACAAGTAT TTACGCGTGA TGGTGTTGAA AAAGATAAAC GTGCTCTAGA AATCGAACAA ATGCAGCTTA AAGAAGCTAA GAAAGACATC ACTGAAGAAT TCCAGATTCT TGAAGGTGGC TTATTAGCAC GTGTTCGCAC ACTTCTAACG CTTGCAGGTA CTTCTGAAGT TAAACTTGAT GCGATGGATC GTAAGCAGTG GTTAGAAATC ACGCTTGATG ATGAATCACA ACAAAATCAA CTTGAGCAGC TTGCTGAGCA ATATGATGAA CTTAAAGCTG AGTTCGATAA GAAATTCGAA ACTAAACGTC GTAAGATCAC TCAAGGTGAT GATCTTGCAC CAGGCGTACT GAAAATCGTT AAAGTTTACC TAGCGGTAAA ACGTCGTATT CAGCCTGGTG ATAAGATGGC GGGTCGTCAT GGTAACAAGG GTGTAATCTC TAAGATTAAC CCTGTTGAAG ACATGCCTTA TGATGAAAAA GGTCAGCCAG TAGATATCGT TCTGAACCCA CTGGGTGTAC CTTCTCGTAT GAACATCGGT CAAATTCTTG AAGTTCATAT GGGTCTTGCT GCGAAAGGTG TTGGTGATAA ACTTAACCAA ATGCTTAAAG AGCAACAAGA ACTGCATAAG TTCCGTAACT TCTTACAAAA AGTATACGAT CTTGGTGAAA CTCGCCAAGA AGTAGACATC GCTGCACTGT CTGATGACGA AGTTCGTACA TTAGTTAAGA ACTTACGCGG TGGTTTACCA ATCGCAACAC CAATCTTTGA TGGTGCTCCA GAATCATCAA TTAAAGAACT ATTAAAACTT GTTGATCTGC CAGAATCTGG TCAGTTGAAA TTGTTTGATG GTCGTACTGG TGATGCGTTT GAGCGTCCTG TAACTGTTGG TTACATGTAT ATGCTAAAAC TAAACCACTT AGTCGATGAC AAGATGCACG CACGTTCTAC CGGCTCTTAC AGCCTTGTAA CTCAGCAGCC ACTTGGTGGT AAAGCTCAGT TCGGTGGTCA GCGTTTCGGT GAGATGGAAG TATGGGCACT TGAAGCATAT GGTGCTGCAT ATACTCTACA AGAAATGCTA ACAGTTAAGT CGGATGACGT GAACGGTCGT ACTAAGATGT ATAAAAACAT CGTAGATGGC GATCATCGTA TGGAACCAGG TATGCCAGAA TCATTCAACG TATTGTTGAA AGAGATCCGC TCACTTGGTA TCAACATCGA GTTAGAAGAC GAAGAATAA
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Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFTKFIE QDPEGQYGLE AAFRSVFPIQ SYNGNSKLEY VSYNLREPEF DVKECQIRGV TYSAPLRVKL RLVVYDKDAP AGTVKDIKEQ EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARVIPYR GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALRKTTEEI LDLFFDKVVF EVKDQTLMME LLPERLRGET ATFDIESNGK VYVEAGRRIT ARHIRQLTKD EVNNIEVPVD YIVGKVASHD YVNEDTGEII IAANQEFSLE DLANLSQAGH KKIEVLFTND LDHGAYISDT LRADSTVDRL SALVEVYRMM RPGEPPTKEA AESLFESLFF SEDRYDLSTV GRMKFNSSIG RDNGEGAGIL DETDIIEVMR KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVRERLS LGDLDAIMPQ DLINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEVTHKRRI SALGPGGLTR ERAGFEVRDV HATHYGRLCP IETPEGPNIG LINSLSAYAR CNEYGFLETP YRRVVDNIVT EDVDYLSAIE EGTFVIAQAN AVLTEEGTFA DELIIARQKG ESGLHPREHI QYMDVATNQV VSVAASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGIERCVAI DSGVTAVAKR GGMVQSVDAS RIVIKVNEEE LVPGEAGIDI YNLTKYTRSN QNTCINQRPT VLPGEPVTRG DVLADGPSTD LGELALGQNM RIAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELSCVA RDTKLGSEEI TADIPNVGEA ALSKLDESGI VYIGAEVKGG DILVGKVTPK GETQLTPEEK LLRAIFGEKA SDVKDSSLRV PNSVSGTIID VQVFTRDGVE KDKRALEIEQ MQLKEAKKDI TEEFQILEGG LLARVRTLLT LAGTSEVKLD AMDRKQWLEI TLDDESQQNQ LEQLAEQYDE LKAEFDKKFE TKRRKITQGD DLAPGVLKIV KVYLAVKRRI QPGDKMAGRH GNKGVISKIN PVEDMPYDEK GQPVDIVLNP LGVPSRMNIG QILEVHMGLA AKGVGDKLNQ MLKEQQELHK FRNFLQKVYD LGETRQEVDI AALSDDEVRT LVKNLRGGLP IATPIFDGAP ESSIKELLKL VDLPESGQLK LFDGRTGDAF ERPVTVGYMY MLKLNHLVDD KMHARSTGSY SLVTQQPLGG KAQFGGQRFG EMEVWALEAY GAAYTLQEML TVKSDDVNGR TKMYKNIVDG DHRMEPGMPE SFNVLLKEIR SLGINIELED EE
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