| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2865 |
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| Symbol | rpoC |
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| ID | 6988351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3100411 |
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| End bp | 3104616 |
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| Gene Length | 4206 bp |
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| Protein Length | 1401 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643381138 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_002264195 |
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| Protein GI | 209696265 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.346532 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAAGCA CAACATAAGA CCGAAGAATT TGATGCAATC
AAAATCGGTC TTGCTTCACC TGACCAAATT CGTTCATGGT CTTTTGGTGA AGTTAAAAAG
CCAGAAACAA TCAACTATCG TACCTTTAAG CCAGAACGTG ACGGTCTTTT CTGTGCACGT
ATCTTTGGCC CAGTGAAAGA CTACGAGTGC TTATGTGGTA AATATAAGCG CCTGAAGCAC
CGTGGTGTTA TCTGTGAAAA ATGTGGCGTA GAAGTAACGC AAACTAAAGT TCGTCGTGAC
CGTATGGGTC ATATTGAACT TGCGTCTCCT GTTGCACACA TCTGGTTCCT TAAGTCACTT
CCGTCTCGTA TTGGTTTGTT AATGGACATC CCTCTGCGTG ATATCGAACG TGTACTTTAT
TTTGAATCAT ATGTGGTTAC AGAGCCAGGT ATGACTGACT TAGAGCGCAG CCAACTTCTT
TCAGAAGAAG AATATCTTGA TAAGCTTGAA GAGTTCGGTG ACGAATTCAC AGCTAAGATG
GGTGCGGAAG CGATTAAAGA CTTGCTTGGT TCTATGGACA TGCAAGCTGA AATCGAGAAC
ATGCGTGAAG AGTTAGAAAC AACTAACTCA GAAACAAAAC GTAAGAAGCT GACTAAGCGT
TTAAAACTTG TAGAAGCATT TGTTCAATCT GGTAACAACC CAGAATGGAT GATCTTAACT
GTTCTACCTG TTCTTCCGCC AGATCTTCGT CCTCTAGTTC CACTAGATGG CGGTCGTTTT
GCTACGTCTG ATCTAAATGA TTTATACCGT CGTGTGATTA ACCGTAACAA CCGTTTGAAG
CGTCTTTTAG ACTTAGCTGC ACCAGACATC ATCGTACGTA ATGAAAAACG TATGCTGCAA
GAGTCTGTTG ATGCGCTGCT TGATAACGGT CGTCGTGGTC GTGCGATTAC AGGTTCTAAC
AAGCGTCCTT TGAAATCTCT TGCTGATATG ATCAAGGGTA AACAAGGTCG TTTCCGTCAG
AACTTGCTTG GTAAACGTGT AGACTACTCT GGTCGTTCTG TTATTACAGT AGGTCCATAC
CTTCGTCTAC ATCAGTGTGG TCTTCCTAAG AAGATGGCAC TTGAATTATT TAAACCATTT
ATTTATAGCA AATTAGAAGG TCGTGGTTTT GCTACGACAA TCAAAGCTGC TAAGAAAATG
GTAGAGCGTG AAGAAGCGAT CGTTTGGGAT ATCCTAGATG ACGTTATTCG TGAACACCCA
GTACTGCTTA ACCGTGCACC AACACTTCAC CGTCTTGGTA TTCAAGCGTT TGAACCAGTA
CTAATCGAAG GTAAAGCGAT TCAGCTGCAC CCATTAGTGT GTGCGGCATA TAATGCCGAT
TTCGATGGTG ACCAGATGGC GGTACACGTA CCACTAACTC TGGAAGCTCA GCTAGAAGCT
CGTACCCTAA TGATGTCGAC GAATAATATT CTGTCGCCAG CATCAGGTGA TCCAATCATC
GTTCCTTCTC AGGATGTTGT ATTAGGTCTG TACTACATGA CGCGTGACAG AATTAACGCG
AAAGGCGAAG GCATGTACCT AGAAGGTTTT GCTGAAGCTG AAAAAGCATA CCGTACAGGT
AATGCTGAGC TACATGCTCG CGTTAAAGTT CGTATCACAG AAGTTCTTCG TGATGAGAAC
GGTATTGAAA CTCGTGAAAC TAAACTGGTT GATACGACTG TTGGTCGTGC AATGCTATGG
CAGATCGTTC CTGAAGGTCT TCCTTACAGC ATCATTAACC AGAAGTTAGG TAAGAAGCAA
ATCTCTAACC TATTAAACGA GGCATATCGT ACTCTTGGTT CTAAAGATAC AGTAATCTTT
GCAGACCAAA TCATGTACAC CGGTTTCGCA TACGCGGCAT TGTCTGGTGC GTCTGTTGGT
ATCGATGACA TGGTTATCCC TGATGCTAAG TATACGAAAG TTGCTGAAGC AGAAGAAGAA
GTTAAGCAAA TTCAAGAACA ATATCAATCT GGTCTTGTAA CTGCTGGCGA ACGTTACAAC
AAAGTTATCG ATATCTGGGC AGCAACGAAT GAACAAGTTG CTAAAGAGAT GATGGATAAC
TTGTCTTCAG AAACTGTGCT TAACCGCGAT GGTGAAGAAG AGCAACAAGA ATCGTTTAAC
AGCGTTTACA TGATGGCCGA TTCAGGTGCT CGTGGTTCTG CAGCTCAGAT TCGTCAGCTT
GCAGGTATGC GTGGTCTGAT GGCGAAACCA GATGGTTCAA TCATCGAAAC ACCGATCACG
GCGAACTTCC GTGAAGGTCT AAACGTAAAC CAATATTTCA TCTCAACGCA TGGTGCGCGT
AAAGGTCTTG CCGATACTGC ACTTAAAACA GCGAACTCAG GTTACCTGAC TCGTCGTTTA
GTAGACGTTG CTCAAGATGT AGTCGTTCAT TTAGATGACT GTGGAACACT TGAAGGTGTT
ACCATGATGC CTCTAATTGA AGGTGGTGAT GTTAAAGAAC CTCTACATGA ACGTGTTCTA
GGTCGTGTCG TTGCTGAAGA TGTATTGAAA CCAGGTACTG ATGAGATCCT TCTTCCACGT
AACACGCTTC TTGATGAGAA GCAGTGTCAA ATCGTTGAAG AAAACTCAGT TGACCAAATC
AAAGTACGTT CAGTTGTAAG TTGTGAAGCT GACTTCGGTT GTTGTGCAAA CTGTTATGGC
CGTGACCTTG CTCGTGGACA CATGGTAAAC CAAGGTGAGG CAGTCGGTGT TATTGCGGCT
CAGTCTATTG GTGAACCTGG TACACAGCTT ACGATGCGTA CGTTCCATAT CGGTGGTGCG
GCATCTACAG CAGCAGCAGA CAACAGCATT CAAGTTAAGA CGACAGGTTC GATTAAACTT
CATAATGCTA AGCACGTAAC GAATAACGAA GGCAACCTAG TTATTACTTC TCGTGCATCT
CAACTGACGG TTATTGATGG GCATGGTCGT ACGAAAGAAA GCTACAAGCT ATCTTACGGT
ACTATTCTTT CTAAGAAAGA TGGTGATGTT GTGACTCAAG GCGATAAGAT CGCAGCTTGG
GACCCGCATA CAATGCCAAT CATCACAGAA GTAAAAGGTC AAGTTCAATT CGTTGATATG
ATTGATGGTG TGACTATTAC AACTCAAACT GATGAGTTAA CTGGTCTATC GTCAATTGTT
ATCCTTGATA CGGCTGAGCG TGCTTCTGCT GGTAAAGACA TGCGTCCAAC AGTGAAACTT
GTTGATGCGA ATGGTCGTGA CATCATGATC CCTGGCACTG AAATGCCAGC TCAATACTTC
CTACCAGGTA AAGCAATTGT TAACTTGGCT GATGGTGGCG ATGTAGGTAT CGGTGAAACA
CTGGCTCGTA TTCCTCAAGC TTCAAGTGGT ACTAAAGATA TTACCGGTGG TCTTCCACGC
GTTGCGGATT TATTTGAAGC TCGTAAACCT AAAGAGCCAG CAATTCTTGC TGAGCACGCA
GGTATCGTTG CTTTTGGTAA AGAAACGAAA GGTAAAGTAC GCTTATTGAT CACTCGTGAT
GATACTGGTG AAGTTTATGA AGAAATGATT CATAAACATC GTCAACTTAA CATTTTTGAT
GGTGATAAAG TTGAACGCGG TGACGTTATT TCTGATGGTC CAGAAACACC ACATGATATT
CTACGTTTAC GTGGTATTCA TGCCGTTACT GAATACATCA CAAACGAAGT TCAAGAAGTT
TACCGTTTAC AAGGCGTTAA GATTAACGAT AAGCACATTG AGACTATCGT TCGTCAAATG
CTACGTAAGT GTACTATCAC ACATTCTGGT GACTCTACTT TCCTTGAAGG TGAGCAACTA
GAATTTGCAA ACGTAACTAT TGCAAACCGT CAGCTTGAAG CTGAAGGAAA GCAACCAGCT
CGTTTTGGTC GTGATTTACT AGGTATTACT AAAGCGTCTC TTGCTACTGA GTCGTTCATC
TCTGCTGCAT CGTTCCAAGA AACGACGCGC GTACTTACTG AGGCTGCGGT TTCTGGTAAG
CGTGATGAAC TACGTGGTCT GAAAGAAAAC GTAATCGTTG GTCGTCTAAT TCCAGCGGGT
ACAGGTTTCT CATACCACCA AGCACGTCAA AAGCAAAAAG CAGCAGCGAA AGTTGCGCCT
TCTGCTGAAG AAGCAACAGA TAACTTAGCG GCACTATTGA ATGCGGGTTT CTCTTCTGAA
GAGTAA
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| Protein sequence | MKDLLKFLKA QHKTEEFDAI KIGLASPDQI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRD RMGHIELASP VAHIWFLKSL
PSRIGLLMDI PLRDIERVLY FESYVVTEPG MTDLERSQLL SEEEYLDKLE EFGDEFTAKM
GAEAIKDLLG SMDMQAEIEN MREELETTNS ETKRKKLTKR LKLVEAFVQS GNNPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
LRLHQCGLPK KMALELFKPF IYSKLEGRGF ATTIKAAKKM VEREEAIVWD ILDDVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RTLMMSTNNI LSPASGDPII VPSQDVVLGL YYMTRDRINA KGEGMYLEGF AEAEKAYRTG
NAELHARVKV RITEVLRDEN GIETRETKLV DTTVGRAMLW QIVPEGLPYS IINQKLGKKQ
ISNLLNEAYR TLGSKDTVIF ADQIMYTGFA YAALSGASVG IDDMVIPDAK YTKVAEAEEE
VKQIQEQYQS GLVTAGERYN KVIDIWAATN EQVAKEMMDN LSSETVLNRD GEEEQQESFN
SVYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVN QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDVVVH LDDCGTLEGV TMMPLIEGGD VKEPLHERVL
GRVVAEDVLK PGTDEILLPR NTLLDEKQCQ IVEENSVDQI KVRSVVSCEA DFGCCANCYG
RDLARGHMVN QGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASTAAADNSI QVKTTGSIKL
HNAKHVTNNE GNLVITSRAS QLTVIDGHGR TKESYKLSYG TILSKKDGDV VTQGDKIAAW
DPHTMPIITE VKGQVQFVDM IDGVTITTQT DELTGLSSIV ILDTAERASA GKDMRPTVKL
VDANGRDIMI PGTEMPAQYF LPGKAIVNLA DGGDVGIGET LARIPQASSG TKDITGGLPR
VADLFEARKP KEPAILAEHA GIVAFGKETK GKVRLLITRD DTGEVYEEMI HKHRQLNIFD
GDKVERGDVI SDGPETPHDI LRLRGIHAVT EYITNEVQEV YRLQGVKIND KHIETIVRQM
LRKCTITHSG DSTFLEGEQL EFANVTIANR QLEAEGKQPA RFGRDLLGIT KASLATESFI
SAASFQETTR VLTEAAVSGK RDELRGLKEN VIVGRLIPAG TGFSYHQARQ KQKAAAKVAP
SAEEATDNLA ALLNAGFSSE E
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