Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2851 |
Symbol | hemE |
ID | 6987947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 3089204 |
End bp | 3090271 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643381128 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_002264185 |
Protein GI | 209696255 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.180798 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGAAT TAAAAAACGA CCGTTACCTA CGTGCGTTAT TAAAACAACC AGTAGATTAC ACACCAGTTT GGATGATGCG CCAAGCAGGC CGTTACCTAC CAGAATATAA AGCCACGCGT GCAGAAGCGG GCGATTTTAT GTCTTTGTGT AAGAATGCAG GACTTGCTTC TGAAGTTACG CTTCAGCCTT TGCGCCGTTT CCCTCTAGAT GCTGCGATTT TATTTTCAGA TATCCTGACG ATTCCAGATG CAATGGGTCT AGGTCTGTAC TTTGAAGCTG GCGAAGGTCC TAAATTTGAA CGTCCAATTA CGTGTAAAGC CGACGTCGAT AAAATTGGCA TTCCTGATCC TGAAGGTGAA TTACAATACG TAATGAATGC CGTACGTCAG ATCCGTAAAG ATCTTAAAGG TGAAGTTCCA TTGATTGGCT TCTCTGGTAG CCCGTGGACA TTGGCGACTT ACATGGTTGA AGGCGGAAGC TCTAAAGCTT TTACTAAAAT CAAAAAAATG ATGTATGCAG AGCCTGCAAT ATTACATCTA TTACTCGATA AATTGGCAGA TACTGTTATT GAGTACCTTA ATGCTCAAAT TAAAGCCGGT GCACAATCGG TCATGGTATT TGATACATGG GGCGGTGTAT TAACCCCTCG TGACTATAAC GAGTTCTCAT TACGTTATAT GCATAAAATT GTCGATGCAT TGATTCGTGA AAATGAAGGT CGTCGTGTTC CTGTGACTCT ATTCACAAAG AATGGTGGAA TGTGGTTAGA GCAAATTGCA GCAACAGGTT GTGATGCCAT TGGTCTGGAT TGGACAATCA ATATTGCTGA TGCGAAGAAA CGTATTGGTG ATAAAGTTGC TCTGCAAGGT AACATGGATC CATCAATCCT TTATGCACAA CCTGAGCGTA TTCGCCAAGA AGTTAGCACT ATTCTTGAAG GGTTTGGTAA TGAAGGAACA GGCCACGTAT TCAATCTAGG TCATGGTATT CATCTTGATG TACCGCCTGA AAATGCGGGT GTATTTGTTG ATGCGGTTCA TGAGTTATCA AAACCATATC ATAAATAG
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Protein sequence | MTELKNDRYL RALLKQPVDY TPVWMMRQAG RYLPEYKATR AEAGDFMSLC KNAGLASEVT LQPLRRFPLD AAILFSDILT IPDAMGLGLY FEAGEGPKFE RPITCKADVD KIGIPDPEGE LQYVMNAVRQ IRKDLKGEVP LIGFSGSPWT LATYMVEGGS SKAFTKIKKM MYAEPAILHL LLDKLADTVI EYLNAQIKAG AQSVMVFDTW GGVLTPRDYN EFSLRYMHKI VDALIRENEG RRVPVTLFTK NGGMWLEQIA ATGCDAIGLD WTINIADAKK RIGDKVALQG NMDPSILYAQ PERIRQEVST ILEGFGNEGT GHVFNLGHGI HLDVPPENAG VFVDAVHELS KPYHK
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