| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2829 |
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| Symbol | |
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| ID | 6987935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3063960 |
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| End bp | 3067406 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643381106 |
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| Product | membrane associated response regulator, histidine kinase |
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| Protein accession | YP_002264163 |
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| Protein GI | 209696233 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAG GATGGATCGT CGTGCCAGTT TCGCTGGCTT ATTTAGGATT GCTATTTTTA
ATTGCCTGGT ATGGTGATCG TCAAAAAGGG TGGTTATCGC GTTATCGCCC GTGGATTTAC
AGTCTTTCTA TTGCGGTTTA CTGCACCTCT TGGACCTTTT ATGGCACGGT AGGCCAAGCC
ACTAGCAACC CGTGGTCTTT TCTTCCTATT TATCTTGCCC CCATTCTTGT GTTTGTTTTT
GCATGGCGTT TTTTAGCCCG AATTATTCTG ATTGCAAAGC GAGAGCACAT TACGTCCATT
GCTGATTTTA TTGCGGCTCG TTACGGTAAA TCTCAAGGTT TAGCCGGTGT GATTACGGTC
ATTGCGGTGA TTGGTATTCT TCCTTATATT GCGTTGCAAT TACGAGGGAT CACCATGGGG
CTCGATCTTG TTGCTCCTAA TTTAGCTCAG GATTTAGGTT ATCAAGATGG CCACATTTCT
TGGTTTGTCA GTGGTGCATT AGCGATTTTT ACTATTCTAT TTGGTACTCG ACATATAGAT
ACCACTGAAC ATCATCGTGG ATTGATGATG GCAGTGGCCT TTGAATCCAT TGTTAAGCTT
GTTGCCTTTC TTTCGGTTGG TGGGTTCATT TTATATTTGG CGTATTCAGA GCCAACGGTC
GATCTGATTA CCGTAGCAAA AGACACCTAT CAATCGCCTA ATCTAATTAC CTTATTGTTT
CATACGTTAT TAACGATGGC GGCGATAATT TGTTTGCCTC GTCAGTTCCA CACAACAGTG
GTGGAGAATG AACAAGCGCA AGACTTAAGA ACTGCACGCT GGGTCTTTCC TCTTTATTTA
TTATTGATGG GATTATTTGT CTTACCTATC TCATGGGCAG GACAGGGATT GCTCTCTGGT
GGCGTTAGTG ACTCTTTTGT CATTAGCGTG CCATTGTCTA TTGGCGCTGA ACACATGGCA
TTACTTGCTT TTGTTGGAGG GACTTCAGCG GCGAGTGGGA TGGTGATCGT CTCGACCATT
GCACTTGCGA TTATGGTTTC GAATGATTTA GTCTTGCCTT TACTCTTACG TAGAGTAAGA
ACCACGTCTC GAACCTTTGG GCATTTTTCT AAATTATTAG TGACGATTCG TCGGTTATTG
ATAGTTCTAT TATTAGTTGG CGCATGGGGT TTTTATCAAG CGTTGGATTC AATCGATTCT
CTTTCTGTTA TTGGGTTATT GGCGTTTGCT GCAATCGCGC AATTTGCACC AGCACTTATT
GGTGGTTTGT ATTGGCGACA AGGAAATAAA AAAGGAGTCT ATGCGGGTTT GGCGATTGGC
TTTGTGCTGT GGTTAATCAC GCTGATGAGT CAGACGCAAA TGTTAGCGGG CAGTGCTGAG
AATAATTTTT TATTGTGGAT CATTACTCCG CCTAATTGGC TGCAAAATCT GGAAGTTAAA
ACGTCCGATT GGGGAATGAT GTTGAGCTTA AGTTTGAATG CCATGTTGTT CATTTTTGTT
TCTTCTGTTA CTCGAGCGTC GTTAAGTGAG CGTTTACAAG CCGCGGCTTT TGTTGGTGCT
CCCTTGCCTG AAAGTGAGGA TGTAAGCGTA TACCAAACTC GCGTGACAGT GGCTGAACTT
GAAATGTTAG CGTCCCGTTT TGTCGGGCGA AAAAGAGCAA GAAAAGCATT TCGTCAGTTT
GCTCAGCAGC ATGGTGATGC GTTACTTCCA CAGCAACAAG CCAGCTCTCA ATTGATTCGT
CATACAGAGA GAGTGCTCGC CGGAGTATTT GGTGCCTCTT CTTCTCGCTT GGTACTGACG
TCTGCTTTGC AGGGACGAAA TATGCAACTT GAAGAGGTCG CAACCATTGT TGATGAGGCT
TCTGAACTTT ATGATTTTAG TCGTGGGTTA TTGCAAGGAG CGATCGAACA CATAAGCCAA
GGCATTGCTG TGGTTGATAA GCAGATGAAG CTAGTGGCAT GGAATCAACG CTATTTAGAG
TTATTTACGT TTCCAGCAGG ACTTATTCAA GTCGGGCGTC CGATAGCGGA TGTTATCCGA
CATAATGCAG AACAAGGGCT TTGTGGGCCG GGTGATCCTG AAGTGCATGT TAAGCGACGA
GTTGAGCATT TAGAGCGAGG CACTCGACAC GTTTCTTCTC GAATTCGAGC AGATGGACAG
GTTATTGAAG TGCAAGGTAA CCCGATGCCA AACGGTGGTT TTGTGATGAG CTTTACCGAC
ATCACGGTAT TTAGACAGGC AGAAAAAGCC CTAAAAGAAA CCAATGAAAG CCTAGAATTT
CGAGTGCATG AACGAACCAA AGAATTAGAA AAATTGAATC AGAGATTGGT GGGCGCTACC
CAAAGTGCAG AAAAAGCCTC GCACTCAAAA ACACGATTAT TAGCGGCGGT GAGTCATGAT
TTAATGCAGC CCTTGAATGC CGCTCGCTTG TTTGCGTCTT CATTAAGCGA AGTCGCTAAA
GACGGTGAGA CAAAGAAAAT ATCAGGGCAT ATTGAAAGTG CATTAGGGGC GGCAGAAGAG
TTAATCGGCG ATTTATTGGA TATTTCTCGT TTAGAAGCGG GTAAGTTAGA AACCAATGTT
CACGGTTTTT CACTCCACCA TATGCTCTCT AATTTAGAAG CCGAATTTGG TGCGTTAGCA
AAACAACAAG GCATCGATTT TTCAGTGATT CATTCTGATG TGGTGGTGGA ATCCGATCCG
AAATTATTAC GTCGAGTATT ACAGAACTTC TTAACCAACG CCTTTCGATA TAACCCCGAA
GGCAAAGTGG TACTGGGTGC GAGAAGAATC GAAGGTAAAA TTCGTCTGGA TGTATGGGAC
AGTGGTATTG GTATTCCAGA AGAAAAACAA CAAGCCATTT TTGAAGAGTT TACTCGTGTC
GATCAAAGCA GAGCTGATCA AGGATTAGGA TTAGGGTTAG CGATTGCGAG AGGGATCTCT
CATGTGCTCG GGCATACTAT TTCTCTGCGT TCATGGGTGA ATAACGGCTC TGTATTTTCT
GTCACATTGG ATCGTGGTGT GGTGCTTGAA AGCGATGCGC CTACCATAAC CCAAAAGCCT
GAATTGCCAT TAAGTTCGGT TCGTGTGTTG TGTGTGGATA ATGAACCCGA TATTTTGATT
GGTATGGAAT CGCTACTTGA ACGTTGGGGT TGTGAAGTCA AAACGGCGAC GGATTTGATG
GGCAGTTTAC GTTGCTTAGA AGAGGGTTGG GTACCCGATG TCATCTTCTC AGATTACCGA
TTGGATAACG ACCGAACCGG CTTAGAAGTA TTACAACAAT GCCGCTTACG TTTAGGAAAT
AACTTTGAAG GGGTAATGAT CAGTGCAGAT AAAACTGAGG ATTTACTAGA AAGTATTAAA
AGTAATGGTT TTGGTTTTAT TGCAAAGCCA GTCAAACCGT TAAAATTAAG GTCTGTGTTA
AATCGCCATA CTACCTCAGC GGTTTAG
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| Protein sequence | MTQGWIVVPV SLAYLGLLFL IAWYGDRQKG WLSRYRPWIY SLSIAVYCTS WTFYGTVGQA
TSNPWSFLPI YLAPILVFVF AWRFLARIIL IAKREHITSI ADFIAARYGK SQGLAGVITV
IAVIGILPYI ALQLRGITMG LDLVAPNLAQ DLGYQDGHIS WFVSGALAIF TILFGTRHID
TTEHHRGLMM AVAFESIVKL VAFLSVGGFI LYLAYSEPTV DLITVAKDTY QSPNLITLLF
HTLLTMAAII CLPRQFHTTV VENEQAQDLR TARWVFPLYL LLMGLFVLPI SWAGQGLLSG
GVSDSFVISV PLSIGAEHMA LLAFVGGTSA ASGMVIVSTI ALAIMVSNDL VLPLLLRRVR
TTSRTFGHFS KLLVTIRRLL IVLLLVGAWG FYQALDSIDS LSVIGLLAFA AIAQFAPALI
GGLYWRQGNK KGVYAGLAIG FVLWLITLMS QTQMLAGSAE NNFLLWIITP PNWLQNLEVK
TSDWGMMLSL SLNAMLFIFV SSVTRASLSE RLQAAAFVGA PLPESEDVSV YQTRVTVAEL
EMLASRFVGR KRARKAFRQF AQQHGDALLP QQQASSQLIR HTERVLAGVF GASSSRLVLT
SALQGRNMQL EEVATIVDEA SELYDFSRGL LQGAIEHISQ GIAVVDKQMK LVAWNQRYLE
LFTFPAGLIQ VGRPIADVIR HNAEQGLCGP GDPEVHVKRR VEHLERGTRH VSSRIRADGQ
VIEVQGNPMP NGGFVMSFTD ITVFRQAEKA LKETNESLEF RVHERTKELE KLNQRLVGAT
QSAEKASHSK TRLLAAVSHD LMQPLNAARL FASSLSEVAK DGETKKISGH IESALGAAEE
LIGDLLDISR LEAGKLETNV HGFSLHHMLS NLEAEFGALA KQQGIDFSVI HSDVVVESDP
KLLRRVLQNF LTNAFRYNPE GKVVLGARRI EGKIRLDVWD SGIGIPEEKQ QAIFEEFTRV
DQSRADQGLG LGLAIARGIS HVLGHTISLR SWVNNGSVFS VTLDRGVVLE SDAPTITQKP
ELPLSSVRVL CVDNEPDILI GMESLLERWG CEVKTATDLM GSLRCLEEGW VPDVIFSDYR
LDNDRTGLEV LQQCRLRLGN NFEGVMISAD KTEDLLESIK SNGFGFIAKP VKPLKLRSVL
NRHTTSAV
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