| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2780 |
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| Symbol | amiB |
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| ID | 6988867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3010386 |
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| End bp | 3012125 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643381049 |
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| Product | N-acetylmuramoyl-L-alanine amidase |
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| Protein accession | YP_002264116 |
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| Protein GI | 209696186 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.395604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTAATCG GTAAATATCT TCGTACAATT GGGTGTGCAT TACTTGTATT TATATCTACG
AGTGTTTTTT TTGTTTCTGC AAATACATTA GAAGGCGTTC GTGTTTGGCC TTCGCCAGAT
GAAACTCGTA TCGTTATTGA TCTGAATTCA GAAGCGAACT ATAGCTATTT TACATTGAGT
AGCCCTTCTC GTTTAGTTAT CGATCTTAAA AATACCGACT TGAAAGCAAA ATTACCGCTA
ACGGTTAGTG ATAGCAATGT TTTAAGTAAA ATCCGTAAGA GCTCACCTCC TTCAAAGGGG
ACGACTCGTT TGGTTTTTGA ACTTAAGCAT TCTGTCGAAG CTAAGTTATT TAAATTAGCC
CCTACGCCTG GTGGTCAATA TGGTCATCGT TTGGTTATGG ACCTACCTCA TAACGCAAAC
AATAAAGCGG AAGTAAATAA ACCTATTCCC AATAAGCCAT CAACCCCAAT TATCAATTCA
AATATGAATC ATATAATAGG GAATGGAGAA ATTGTTGTCG CGATTGATGC GGGACATGGT
GGTGAAGATC CTGGCTCTAT TGGGCCAACT CGAAAATATG AAAAGCACGC TACTCTCGCG
ATTTCTAAGA AAGTGGTTGC ACGAATTAAT GCTCAGCCTG GAATGAGAGC GGTATTAACT
CGAAGTGGTG ATTATTTCGT TAACTTAAAT AAACGAACGG AAATTGCTCG AAAAAATAAA
TCGCACTTAC TTGTTTCTAT TCATGCGGAC AGCTTTCGCT CACCAAAGCC TCGCGGGGGT
TCTGTGTTTG TGCTCAATAC ACGTCGAGCG AATACAGAAA TTGGTCGTTG GGTTGAAAAG
CATGAGAAAC AATCTGAATT GCTTGGTGGT GCAGGTGATG TATTAGCGAA AAACAGTAAT
GATAGAAACG TGAGTCAAAC ATTATTGGAT TTGCAATTCA GCCATTCTCA GAAGGAAGGG
TATAAGTTAG CCGTTGATGT TCTAGGAGAA ATGGGCAAAG TCATTAAGCT TCATAAAAAA
GCACCTGTTA ATGCGAGTTT GGCTGTTCTT AAATCTCCGG ATATTCCTTC AATCTTGATT
GAAACTGGAT TTATTTCAAA TCCAACAGAA GAGAAACAAC TATTTCAACG AGGTCATCAA
GACAAAATAG CGAGAGCTAT TTCAAATGCA ATCATTCGTT ACCTTAATGA AAATCCACCT
CAAGGAAGTC TTTTAGCTGC ACAAGAGCAA CAGAGTGTAC ATAAAGTACG TTCGGGTGAG
TCGTTATCAT TGATTGCTAA AAAGTACGGT ACGACAACGG CAAAATTAAA GAGTGTAAAT
AAACTTAAAA GTACGAGTTT ATCGGTTGGT CAACTGCTAA CTATCCCAAG TAACAAACCG
GTTTATGTTG CGCCAAAAAC AAATACATCA AACGTCAGTA CATCAACAAC GCAATCTCGT
AAAATCATTA CTCATAAAGT TCGCTCTGGT GAGTACTTAG GCAAGATTGC CGTAAAATAT
AAGGTATCGA CGAGCAGCAT TCGCTCATTA AATCGATTAA AGTCAGATAC TTTATTTGTT
GGGCAAAAAT TGAAAGTGAG CATTGTTGCT CCTATTCAAA AGCATACGGT GAAACGTGGT
GAATTTTTAG GTAAAATTGC ATCTAAATAT GGTGTTACTG TATCGAGTAT ACGAACAGCC
AATAAATTAC GTTCAGATGA GCTAGCTGTC GGACAGGTGC TTATTATCCC AACCAGTTAA
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| Protein sequence | MLIGKYLRTI GCALLVFIST SVFFVSANTL EGVRVWPSPD ETRIVIDLNS EANYSYFTLS
SPSRLVIDLK NTDLKAKLPL TVSDSNVLSK IRKSSPPSKG TTRLVFELKH SVEAKLFKLA
PTPGGQYGHR LVMDLPHNAN NKAEVNKPIP NKPSTPIINS NMNHIIGNGE IVVAIDAGHG
GEDPGSIGPT RKYEKHATLA ISKKVVARIN AQPGMRAVLT RSGDYFVNLN KRTEIARKNK
SHLLVSIHAD SFRSPKPRGG SVFVLNTRRA NTEIGRWVEK HEKQSELLGG AGDVLAKNSN
DRNVSQTLLD LQFSHSQKEG YKLAVDVLGE MGKVIKLHKK APVNASLAVL KSPDIPSILI
ETGFISNPTE EKQLFQRGHQ DKIARAISNA IIRYLNENPP QGSLLAAQEQ QSVHKVRSGE
SLSLIAKKYG TTTAKLKSVN KLKSTSLSVG QLLTIPSNKP VYVAPKTNTS NVSTSTTQSR
KIITHKVRSG EYLGKIAVKY KVSTSSIRSL NRLKSDTLFV GQKLKVSIVA PIQKHTVKRG
EFLGKIASKY GVTVSSIRTA NKLRSDELAV GQVLIIPTS
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