Gene VSAL_I2780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I2780 
SymbolamiB 
ID6988867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp3010386 
End bp3012125 
Gene Length1740 bp 
Protein Length579 aa 
Translation table11 
GC content39% 
IMG OID643381049 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_002264116 
Protein GI209696186 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.395604 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAATCG GTAAATATCT TCGTACAATT GGGTGTGCAT TACTTGTATT TATATCTACG 
AGTGTTTTTT TTGTTTCTGC AAATACATTA GAAGGCGTTC GTGTTTGGCC TTCGCCAGAT
GAAACTCGTA TCGTTATTGA TCTGAATTCA GAAGCGAACT ATAGCTATTT TACATTGAGT
AGCCCTTCTC GTTTAGTTAT CGATCTTAAA AATACCGACT TGAAAGCAAA ATTACCGCTA
ACGGTTAGTG ATAGCAATGT TTTAAGTAAA ATCCGTAAGA GCTCACCTCC TTCAAAGGGG
ACGACTCGTT TGGTTTTTGA ACTTAAGCAT TCTGTCGAAG CTAAGTTATT TAAATTAGCC
CCTACGCCTG GTGGTCAATA TGGTCATCGT TTGGTTATGG ACCTACCTCA TAACGCAAAC
AATAAAGCGG AAGTAAATAA ACCTATTCCC AATAAGCCAT CAACCCCAAT TATCAATTCA
AATATGAATC ATATAATAGG GAATGGAGAA ATTGTTGTCG CGATTGATGC GGGACATGGT
GGTGAAGATC CTGGCTCTAT TGGGCCAACT CGAAAATATG AAAAGCACGC TACTCTCGCG
ATTTCTAAGA AAGTGGTTGC ACGAATTAAT GCTCAGCCTG GAATGAGAGC GGTATTAACT
CGAAGTGGTG ATTATTTCGT TAACTTAAAT AAACGAACGG AAATTGCTCG AAAAAATAAA
TCGCACTTAC TTGTTTCTAT TCATGCGGAC AGCTTTCGCT CACCAAAGCC TCGCGGGGGT
TCTGTGTTTG TGCTCAATAC ACGTCGAGCG AATACAGAAA TTGGTCGTTG GGTTGAAAAG
CATGAGAAAC AATCTGAATT GCTTGGTGGT GCAGGTGATG TATTAGCGAA AAACAGTAAT
GATAGAAACG TGAGTCAAAC ATTATTGGAT TTGCAATTCA GCCATTCTCA GAAGGAAGGG
TATAAGTTAG CCGTTGATGT TCTAGGAGAA ATGGGCAAAG TCATTAAGCT TCATAAAAAA
GCACCTGTTA ATGCGAGTTT GGCTGTTCTT AAATCTCCGG ATATTCCTTC AATCTTGATT
GAAACTGGAT TTATTTCAAA TCCAACAGAA GAGAAACAAC TATTTCAACG AGGTCATCAA
GACAAAATAG CGAGAGCTAT TTCAAATGCA ATCATTCGTT ACCTTAATGA AAATCCACCT
CAAGGAAGTC TTTTAGCTGC ACAAGAGCAA CAGAGTGTAC ATAAAGTACG TTCGGGTGAG
TCGTTATCAT TGATTGCTAA AAAGTACGGT ACGACAACGG CAAAATTAAA GAGTGTAAAT
AAACTTAAAA GTACGAGTTT ATCGGTTGGT CAACTGCTAA CTATCCCAAG TAACAAACCG
GTTTATGTTG CGCCAAAAAC AAATACATCA AACGTCAGTA CATCAACAAC GCAATCTCGT
AAAATCATTA CTCATAAAGT TCGCTCTGGT GAGTACTTAG GCAAGATTGC CGTAAAATAT
AAGGTATCGA CGAGCAGCAT TCGCTCATTA AATCGATTAA AGTCAGATAC TTTATTTGTT
GGGCAAAAAT TGAAAGTGAG CATTGTTGCT CCTATTCAAA AGCATACGGT GAAACGTGGT
GAATTTTTAG GTAAAATTGC ATCTAAATAT GGTGTTACTG TATCGAGTAT ACGAACAGCC
AATAAATTAC GTTCAGATGA GCTAGCTGTC GGACAGGTGC TTATTATCCC AACCAGTTAA
 
Protein sequence
MLIGKYLRTI GCALLVFIST SVFFVSANTL EGVRVWPSPD ETRIVIDLNS EANYSYFTLS 
SPSRLVIDLK NTDLKAKLPL TVSDSNVLSK IRKSSPPSKG TTRLVFELKH SVEAKLFKLA
PTPGGQYGHR LVMDLPHNAN NKAEVNKPIP NKPSTPIINS NMNHIIGNGE IVVAIDAGHG
GEDPGSIGPT RKYEKHATLA ISKKVVARIN AQPGMRAVLT RSGDYFVNLN KRTEIARKNK
SHLLVSIHAD SFRSPKPRGG SVFVLNTRRA NTEIGRWVEK HEKQSELLGG AGDVLAKNSN
DRNVSQTLLD LQFSHSQKEG YKLAVDVLGE MGKVIKLHKK APVNASLAVL KSPDIPSILI
ETGFISNPTE EKQLFQRGHQ DKIARAISNA IIRYLNENPP QGSLLAAQEQ QSVHKVRSGE
SLSLIAKKYG TTTAKLKSVN KLKSTSLSVG QLLTIPSNKP VYVAPKTNTS NVSTSTTQSR
KIITHKVRSG EYLGKIAVKY KVSTSSIRSL NRLKSDTLFV GQKLKVSIVA PIQKHTVKRG
EFLGKIASKY GVTVSSIRTA NKLRSDELAV GQVLIIPTS