| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2777 |
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| Symbol | hfq |
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| ID | 6988656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3007118 |
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| End bp | 3007384 |
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| Gene Length | 267 bp |
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| Protein Length | 88 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643381046 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_002264113 |
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| Protein GI | 209696183 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.909441 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTAAAG GGCAATCTTT GCAAGACCCA TTTTTGAATG CACTGCGTTG CGAAAGGATT
CCAGTGTCTA TTTATTTAGT GAATGGGATT AAATTACAGG GACAAATCGA ATCATTTGAT
CAATTTGTTA TCCTATTAAA GAACACAGTA AATCAAATGG TATATAAGCA TGCGATTTCT
ACTGTTGTTC CTGCTCGTGC TGTAAGCCAT CACACTGCTA GTGATCGACC ACAAGGCGAG
CGCCCACAAG AAACAACAGA AGAGTAA
|
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| Protein sequence | MAKGQSLQDP FLNALRCERI PVSIYLVNGI KLQGQIESFD QFVILLKNTV NQMVYKHAIS
TVVPARAVSH HTASDRPQGE RPQETTEE
|
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