| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2768 |
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| Symbol | rnr |
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| ID | 6989107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2996572 |
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| End bp | 2999073 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643381037 |
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| Product | ribonuclease R |
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| Protein accession | YP_002264104 |
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| Protein GI | 209696174 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTAAGA TTATTCAAAA CGATCCTTTC AAAGATCGAG AAGCAGAAAA GTACGAGAAT
CCAATTCCAA GCCGTGAGTT CATTCTTGAA TTTTTCCAAA AAGCAGAAGC GCCTTTAAAT
CGTAATGACT TATTCGAAGC CCTAGGTTTA TCTGGTGAAG ATAACTATGA AGGCTTACGT
CGTCGTTTAA GAGCAATGGA ACGAGATGGG CAATTAGTCT TTACTCGTCG TCAGTGTTAC
GCGCTACCTG AACGTATTGA AGTATTGAAA GGCCTTGTTC TTGGTCACCG TGATGGCTTC
GGTTGGATCC GTCCTGAAGG CAGCATTGGT AAAGATAACG ATGTGCTTTT GCCTTTCCAC
CAAATGAAAA AAGTCATTCA TGGTGATGTG GTATTAGTGC AACCAACGGG TACCGATAAA
CGAGGCCGAA AAGAAGGTCG TGTTATCCGT GTATTAGAGC CTCATAACGA TGGCATTGTT
GGTCGATTCT TTACGGAAGA TGGATTAAGT TTCGTTGTGC CTGACGATTC GCGTATTAAC
CAAGATATCT TCATTCCTAA TGAGCATAAA ATGAGTGCTC GTATGGGAAA TGTTGTTGTG
ATTAATATCA CTGACCGTGG TGGCCGTGCT CGCGGCATGT CAGGTCATGT TATTGAAGTT
CTTGGTGAGA ATATGGCACC GGGAATGGAA ATTGACATTG CACTTCGTAC TCACAATATT
CCTCATGTAT GGCCAGCAGC GGTTGAAAAA CAAGTTGAAG GGCTAGCAGA GGAAGTGCCA
GAAGAAGCAA AAGAAGGTCG TGTCGATCTT CGTGAACTGC CATTAGTCAC CATTGATGGT
GAAGATGCTC GAGATTTCGA TGATGCGGTA TTCTGTCAAG CAAAAGCCTC AGGTGGCTGG
CGCTTATGGG TTGCGATTGC CGATGTTAGT TATTACGTTC GTCCAGAAAA CGCATTAGAC
AAAGAAGCGA TTCAGCGTGG TAATTCCGTT TACTTCCCTG CTCAAGTGGT TCCGATGTTA
CCGGAAATCT TGTCTAACGG TTTATGTTCA TTGAATCCTC AAGTTGACCG TTTATGTATG
GTGTGTGAGA TGACTATCTC TGCATCAGGA AAACTGTCAG GCTTTAAACA TTACGAAGCG
GTGATGAACT CACACGCGCG TCTTACGTAT AATAAAGTAA GCGACATTCT TGATGGTGAC
GAAGAGCTAA CTCAACGTTA TGAACCGTTG GTTCCGCACT TGAAAGAACT GCACAACATG
TATCAGGTGC TAAAAACAGC ACGTGAAGCG CGTGGTGCCA TTGAATTTGA AACCATTGAA
ACTAAATTTA TTTTCAATGC TGAACGTAAA ATTGATCGCA TCGAACCTGT GATCCGTAAT
GACGCACATA AAATCATCGA AGAATGTATG ATTTTGGCGA ATATCGCTTC AGCGACTTTT
GTAGAAAAAG CAAAAGAGCC AGCGTTGTAC CGTGTGCATG AAGCGCCAGG TGAAGAACGC
TTAACGGGTT TCCGTGATTT CTTAGGAGAA CTGGGTTTAA GCTTATCTGG TGGGTTAACG
CCATCTCCAA CAGATTACGG TCAATTAGTT CATTTGATTG CCGATCGTCC AGATAAAGAA
TTGATTCAAA CGATGTTACT GCGCTCAATG AAGCAAGCGG TATATAACGC AGATAATCAA
GGTCACTTTG GGTTGGCTCT TAAGCGTTAT GCACACTTTA CATCGCCAAT TCGTCGTTAC
CCTGATTTAT TATTGCATCG TGCTATTAAG TATCTTATTG CAAAAGAAAA AGGTCATAAC
ACCGATCGTT GGACACCAAC AGGTGGGTAT CATTATTCGT TTGATGATAT GGATGTGTTT
GGTGAGCAAT GTTCAATGAC AGAGCGTCGT GCAGATGATG CGACACGTGA TGTGTCTGAT
TGGTTGAAGT GTGAATACAT GCAAGACCAT ATTGGCGAAG AACTAGAAGG TGTGATTGCC
AATGTCACGG GCTTTGGTTT CTTTGTTCGA TTGAATGAGT TGCACATTGA TGGTCTGGTA
CATATTTCAT CTTTGGCAAA TGACTATTAC CAATTTGATG CTGCGGGTCA GCGTTTAACG
GGTGAGAGTT CAGGTCAGAT CTTCCGATTG GGTGATCAAG TGACGGTGAA AGTACTTGCC
GTTAACTTAG ATAGTCGCAA CATTGACTTT GAATGCACTA CCTCAATGCG TAAAGCGCGT
GGTCAAGGCA AAACAGCCAA AGACAATGCG AAGACGCGTG ATGATAAAAA AGCCCCTCGC
CGTGATCCTA ATTTTAAAGC GAAAAAAGGC GATAAAGTTG AACCGAAAGG TCGTGGTCAA
TTAGGTGAGC GTAAATCCAA AGGTAAGGGC AAAGTTAATT CAAAAGCTCA AGCCATGGTT
GAACCGACAA AGCGTCCTGA CAGTTCTGCT GAAGGTGCTC CGGCGAATAA AAAACCAAGA
CACAAGAAAA AAGTACGCGC AAGAAAGCCA AAGGCTGAGT AA
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| Protein sequence | MSKIIQNDPF KDREAEKYEN PIPSREFILE FFQKAEAPLN RNDLFEALGL SGEDNYEGLR
RRLRAMERDG QLVFTRRQCY ALPERIEVLK GLVLGHRDGF GWIRPEGSIG KDNDVLLPFH
QMKKVIHGDV VLVQPTGTDK RGRKEGRVIR VLEPHNDGIV GRFFTEDGLS FVVPDDSRIN
QDIFIPNEHK MSARMGNVVV INITDRGGRA RGMSGHVIEV LGENMAPGME IDIALRTHNI
PHVWPAAVEK QVEGLAEEVP EEAKEGRVDL RELPLVTIDG EDARDFDDAV FCQAKASGGW
RLWVAIADVS YYVRPENALD KEAIQRGNSV YFPAQVVPML PEILSNGLCS LNPQVDRLCM
VCEMTISASG KLSGFKHYEA VMNSHARLTY NKVSDILDGD EELTQRYEPL VPHLKELHNM
YQVLKTAREA RGAIEFETIE TKFIFNAERK IDRIEPVIRN DAHKIIEECM ILANIASATF
VEKAKEPALY RVHEAPGEER LTGFRDFLGE LGLSLSGGLT PSPTDYGQLV HLIADRPDKE
LIQTMLLRSM KQAVYNADNQ GHFGLALKRY AHFTSPIRRY PDLLLHRAIK YLIAKEKGHN
TDRWTPTGGY HYSFDDMDVF GEQCSMTERR ADDATRDVSD WLKCEYMQDH IGEELEGVIA
NVTGFGFFVR LNELHIDGLV HISSLANDYY QFDAAGQRLT GESSGQIFRL GDQVTVKVLA
VNLDSRNIDF ECTTSMRKAR GQGKTAKDNA KTRDDKKAPR RDPNFKAKKG DKVEPKGRGQ
LGERKSKGKG KVNSKAQAMV EPTKRPDSSA EGAPANKKPR HKKKVRARKP KAE
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