| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2743 |
|---|
| Symbol | priA |
|---|
| ID | 6988384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2968477 |
|---|
| End bp | 2970678 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643381012 |
|---|
| Product | primosome assembly protein PriA |
|---|
| Protein accession | YP_002264079 |
|---|
| Protein GI | 209696149 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR00595] primosomal protein N' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTATT CAATTGCACA CGTTTCACTG CCCGTTCCTC TTGACCGCAC CTTTGATTAC
TTAATTAAAG CCGGACAACA CCCTGTCATT GGGGGCCGTG TAAAAGTGCC TTTTGGTCGT
CAGCGCCTTA TCGGTATAGT CACAAAATTA AGCAATGACT CTGAATTTGC TCGTGAGAAA
TTAAAAGGAT TAGACTCCGT ACTCGATAGC ACTTCTCTCT GGCCTCCTCA CCTTTATAAG
CTTCTTAATT GGAGCAGCAC TTATTATCAA TACCCATTAG GGGAAACCTT AGCGAATGCG
ATGCCATCGT GGCTACGTAA AGGCAGAGAA GCCAGTTTTG CTGCACTAAA AGCGTGGCAA
ATTACTGAGC TAGGAAAAAA TCAAGATCTC AACAAACTGA CTCGAGCACC GAAACAAGCC
AAGGCCCTTA ACCTTGTTCG TCACCAACAA TGCAGTCACG AACAAATGCT TGAAGAAGAC
ATTACGGCTG CAACCTTAAA AGCCGTCGTG GATAAAGGAT GGATAGAAGA AATCTCTCTT
GCTCCAAAAC CAACTTATTG GCAACGTAAT GTCGAAATAA CACAAGAAAA GCCACAGTTA
AATGAAGAGC AAGCTATTGC TATTGCCACG GTTAATGCAA ACCCTGAATT TGGTTGTTAC
TTATTAGATG GCGTTACGGG ATCGGGTAAA ACGGAAGTGT ATCTCCAGTT ATTAGAGCCT
ATTTTACACG CAGGCCGACA AGCACTTATT CTTGTTCCTG AAATAGGATT AACCCCACAA
ACCATTAATC GCTTTAAGCG TCGTTTTAAT GTGCCTGTCG ACATGATCCA TTCTGCACTT
AATGATACCG AACGTTTAAA TGCATGGTTA GCAGCACGAG ATAACCATGC CGGCATCATT
ATAGGCACTC GCTCAGCACT TTTTACCCCA TTTAATGATC TCGGTATCAT CATTGTCGAT
GAAGAACACG ATGCCTCTTA TAAACAGCAA GACAGCATGA GATATCACGC CCGAGATCTG
GCAGTAATGC GAGCAAATTT AGACAATATT CCGATTGTGC TAGGCTCAGC AACGCCAGCT
CTAGAGACGT TACATAATGC TAAGGTCGGT AAATACCACC ATCTCACATT AACCAAACGC
GCGGGTACTG CAATCCCAGC TCGACATGGT GTGTTAGATG TCAAAGGCTT GTATCTAAAC
AGTGGATTAT CTGCACCTTT AATTGCTCAA ATGAGAAAAC ATTTATCTGA AGGCAATCAG
GTGATGTTAT TTTTGAATCG CCGAGGATTC TCCCCAGCCC TAATGTGTCA CGAATGTGGC
TGGATGGCCG AATGTAAACG CTGTGATGCT TATTATACGT TCCACCAACA CAGTAATGAA
ATTCGCTGCC ACCACTGTGG TTCACAGCAG CCAATAATGC ATCAATGCCA AGGCTGTGGA
TCCACTCAGC TTATTTCTGT AGGGGTTGGT ACCGAACAGC TCGAAACTCA ACTAATGACC
CTCTTTCCTG AATACAAAAC CGTTCGTATC GATCGAGACA GTACTCGCAG AAAAGGCAGC
TTAGAAAACT ATCTAGACGC AATTAAAAAC AACGAATACC AAATCCTTAT TGGCACTCAA
ATGCTAGCAA AAGGGCACCA TTTTCCTAAC GTAACCCTTG TCGGTTTAAT TGATGTAGAT
AGTTCATTGT TTAGTAGTGA TTTTCGAGCT CCTGAACGTT TAGCTCAGTT GTTTATCCAA
GTCGCTGGAC GCGCAGGGCG AGCAAGTAAA CCAGGGGAAG TGATCTTACA AACTCACCAC
CCTGAACACT CTCTTTTACA AAGCCTTCTA CGTCATGGTT ATGGTCACTT TGCTGAACAT
GCGTTAAATG AGCGCAAATT CGCTCAGCTC CCTCCTTATA CGCATTTATC TCTCTTTAGA
GCAGAGTCCA ATAACAATGA CAATGTCGAG CAATTCTTAC GACAAGTCCG TGATATTTTA
GAAAGTAACC CTCAATATCA TGACGCCACA CCAGTGCTAG GGCCTATTCC GGCACCTTTA
GCACGTCGAG CCGGAAAATA CCGTTGGCAA CTGCTCTTTC AAGCGCCAAA TCGTACCGTA
ATGCAATCAA TGTTACGTGG TGCAAAAACC GCGATTGAGC TATTACCATT AGCTAAAAAA
GTACGTTGGA CTTTAGACAT TGAGCCACAA GACCTTAGTT AA
|
|---|
| Protein sequence | MSYSIAHVSL PVPLDRTFDY LIKAGQHPVI GGRVKVPFGR QRLIGIVTKL SNDSEFAREK
LKGLDSVLDS TSLWPPHLYK LLNWSSTYYQ YPLGETLANA MPSWLRKGRE ASFAALKAWQ
ITELGKNQDL NKLTRAPKQA KALNLVRHQQ CSHEQMLEED ITAATLKAVV DKGWIEEISL
APKPTYWQRN VEITQEKPQL NEEQAIAIAT VNANPEFGCY LLDGVTGSGK TEVYLQLLEP
ILHAGRQALI LVPEIGLTPQ TINRFKRRFN VPVDMIHSAL NDTERLNAWL AARDNHAGII
IGTRSALFTP FNDLGIIIVD EEHDASYKQQ DSMRYHARDL AVMRANLDNI PIVLGSATPA
LETLHNAKVG KYHHLTLTKR AGTAIPARHG VLDVKGLYLN SGLSAPLIAQ MRKHLSEGNQ
VMLFLNRRGF SPALMCHECG WMAECKRCDA YYTFHQHSNE IRCHHCGSQQ PIMHQCQGCG
STQLISVGVG TEQLETQLMT LFPEYKTVRI DRDSTRRKGS LENYLDAIKN NEYQILIGTQ
MLAKGHHFPN VTLVGLIDVD SSLFSSDFRA PERLAQLFIQ VAGRAGRASK PGEVILQTHH
PEHSLLQSLL RHGYGHFAEH ALNERKFAQL PPYTHLSLFR AESNNNDNVE QFLRQVRDIL
ESNPQYHDAT PVLGPIPAPL ARRAGKYRWQ LLFQAPNRTV MQSMLRGAKT AIELLPLAKK
VRWTLDIEPQ DLS
|
|---|
| |