| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2742 |
|---|
| Symbol | cytR |
|---|
| ID | 6987904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2967266 |
|---|
| End bp | 2968273 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643381011 |
|---|
| Product | DNA-binding transcriptional regulator CytR |
|---|
| Protein accession | YP_002264078 |
|---|
| Protein GI | 209696148 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACAA TGAAGGATGT TGCTTTGTCT GCGGGAGTAT CAACAGCAAC CGTATCACGG
GCATTAATGA CACCAGAGAA GGTATCATTA AGCACTCGAA AAAGAGTGGA GGACGCCGTT
CTGGAGACGG GTTACTCTCC AACAACATTG ACGCGAACCT TGCGTCGTAA CGAATCAAAA
ACCATCGTAA CCATTGTGCC TGATATCTGT GATCCCTATT TCAGTGATAT CCTACGTGGT
ATTGAAGATG CAGCCGTAGA GAATGGCTAC ATCATTTTGG TTGGCGACAG TAGCCAACAA
AAGAAACGTG AACAAACTTT TGTCAATTTA GTCTATACCA AACAAGTTGA CGGTATGGTT
CTCCTCGGTT CAGATCTTCC ATTTAGCGTC AGTCGTCAAG AACAAAAGAA TTTACCCCCA
TTAGTGATGG CGTGTGAATA CGCTCCAGAA CTCGAATTAC CTACCGTTCA CATTGATAAC
CTAACCGCGG CTTATGAAGC GGTGAATTAC CTAACAAAAC TGGGTCATAA GCGCGTCGCT
GAAATTTCAG GTCCTGAAGA TTCAGCATTA TGCCAATTTA GGCATCAAGG TTACCAACAA
GCATTACGCC GCGCAGGAAT AACAATGAAC ACCACTTATG TTCATTATTC TGATTTTTCT
TTTCAGGCTG GCGCTAAAGC AATCACAAGC TTACTCTCAT TATCATCACC GCCAACGGCT
ATTTTTTGTC ATAACGATAT AATGGCGATT GGTGCGATTC AAAAAGCAAA GCAAATGGGA
TTTCGAGTTC CACAAGACAT TTCAATCATG GGCTTTGATG ACATTGAATT TTCACAGTAC
TGCGATCCGC CACTCACCAC CATATCTCAG CCTAGATATG AGATAGGACG CCAATCGATG
TTAATGCTTT TAGATTTATT AAAAGGTCAT GATGTGCGTT CAGGCTCTCG ACTTTTAGAG
TCATCTTTAG TGGTAAGAGA AAGTACGGCT CCCCCTAAAA ACACCTAA
|
|---|
| Protein sequence | MATMKDVALS AGVSTATVSR ALMTPEKVSL STRKRVEDAV LETGYSPTTL TRTLRRNESK
TIVTIVPDIC DPYFSDILRG IEDAAVENGY IILVGDSSQQ KKREQTFVNL VYTKQVDGMV
LLGSDLPFSV SRQEQKNLPP LVMACEYAPE LELPTVHIDN LTAAYEAVNY LTKLGHKRVA
EISGPEDSAL CQFRHQGYQQ ALRRAGITMN TTYVHYSDFS FQAGAKAITS LLSLSSPPTA
IFCHNDIMAI GAIQKAKQMG FRVPQDISIM GFDDIEFSQY CDPPLTTISQ PRYEIGRQSM
LMLLDLLKGH DVRSGSRLLE SSLVVRESTA PPKNT
|
|---|
| |