Gene VSAL_I2697 details

Gene Information

• Locus tag: VSAL_I2697
• Symbol: rpoD
• ID: 6988414
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2919125
• End bp: 2920957
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643380967
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_002264035
• Protein GI: 209696105
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.057224
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCAAA ATCCGCAGTC ACAGCTAAAA TTACTTGTAA TTAAAGGCAA GGAACAAGGC 
TATCTGACCT ACGCAGAAGT TAACGATCAC CTACCAGAAG AAATTGTAGA TTCTGAGCAG 
GTTGAAGATA TTATTCAAAT GATCAATGAC ATGGGTATCA AAGTGGTTGA AACCGCTCCT 
GATGCCGATG ATATGTCATT GAATGATGAT GATGCCGTAA CTGATGAAGA TGCAGCAGAA 
GCCGCTGCAG CCGCACTATC AAGTGTTGAA AGTGAAATTG GCCGTACTAC GGACCCAGTT 
CGTATGTATA TGCGTGAAAT GGGTACCGTT GAACTTCTTA CTCGTGAAGG CGAAATCGAC 
ATCGCTAAAC GTATTGAAGA AGGCATCAAT GAGGTTCAGT GTTCTGTTGC TGAATTCCCA 
GGCGCTATTT CATACTTACT AGAACAGTTT GATAAAGTTC AAGCCGAAGA AATTCGCTTA 
ACTGACATCA TCTCTGGTTT TGTTGATCCT AATGATGACG GTTCAGCGGC ACCAACTGCG 
ACTCATATCG GCTCAGAATT GAGCGAATCA GATCTTGCTG ATGAAGATAA AGAAGCAAAA 
GATGATGAGG AAGAAGATGT AGGTATCGAT CCAGAGCTTG CTTTGGAAAA ATTCACTCAA 
CTTCGTACTT CTTATCATAA CATGCAACTT GCTTTCGAAG AGCATGGTCG TGATAACGGA 
AAAGCTCGTG AAGCAATCGG TGAACTCACT GATGTATTCC GTGAATTCAA ACTGATCCCT 
AAACAATTTG ATTTTCTTGT TCGTGAAATG CGTGGCAGCA TGGATCGTGT TCGTACACAA 
GAACGCTTAA TTATGCGTAT GTGTGTTGAA TACGGGAAAA TGCCTAAGAA GTCATTTATT 
GCTCTGTTCT CAGGCAATGA AGCTTCTGAC GAATGGTTTA ACGAAATTCT TGCGTCAGAT 
AAGCCATACG TAGAACGCCT AAAGCGTTAC GAAGAAGACA TTCGCCGTTC AATTAAGAAA 
ATTAACAGCA TTGTTAAAGA AACAGGTTTA CCAGTTGTAA ATATCAAAGA CATCAGCCGT 
CGTATGTCTA TCGGTGAAGC GAAAGCTCGT CGTGCGAAAA AAGAAATGGT TGAAGCAAAC 
TTACGTCTTG TTATCTCAAT TGCAAAAAAA TACACAAACC GTGGTTTACA ATTCTTGGAT 
CTTATTCAAG AAGGTAACAT TGGTCTAATG AAAGCCGTTG ATAAATTTGA ATACCGTCGT 
GGTTATAAGT TCTCAACTTA TGCGACATGG TGGATCCGTC AAGCTATCAC TCGTTCAATT 
GCCGACCAAG CACGTACTAT TCGTATTCCT GTACACATGA TTGAAACGAT CAATAAATTG 
AATCGTATTT CACGTCAAAT GCTACAAGAA ATGGGTCGCG AACCATTACC TGAAGAACTT 
GCTGAACGCA TGCAAATGCC AGAAGACAAG ATCCGTAAGG TTTTGAAAAT TGCAAAAGAA 
CCTATTTCAA TGGAAACACC AATTGGTGAT GATGAAGATT CGCACCTAGG TGATTTCATC 
GAGGATAATA CCCTTGAACT TCCTGTTGAT TCTGCAACTT CAACCAGTTT GAAATTTGCA 
ACTAACGATG TTCTTGCTGG TTTAACACCT CGTGAAGCAA AAGTACTTCG TATGCGTTTC 
GGTATTGATA TGAATACTGA CCATACGCTA GAAGAAGTGG GCAAGCAATT TGACGTAACA 
CGTGAACGTA TTCGTCAAAT CGAAGCAAAA GCGCTTCGTA AATTGCGTCA TCCAAGTCGT 
TCTGAAGTAT TACGTAGTTT CTTAGACGAA TAA 

 

Protein sequence

MDQNPQSQLK LLVIKGKEQG YLTYAEVNDH LPEEIVDSEQ VEDIIQMIND MGIKVVETAP 
DADDMSLNDD DAVTDEDAAE AAAAALSSVE SEIGRTTDPV RMYMREMGTV ELLTREGEID 
IAKRIEEGIN EVQCSVAEFP GAISYLLEQF DKVQAEEIRL TDIISGFVDP NDDGSAAPTA 
THIGSELSES DLADEDKEAK DDEEEDVGID PELALEKFTQ LRTSYHNMQL AFEEHGRDNG 
KAREAIGELT DVFREFKLIP KQFDFLVREM RGSMDRVRTQ ERLIMRMCVE YGKMPKKSFI 
ALFSGNEASD EWFNEILASD KPYVERLKRY EEDIRRSIKK INSIVKETGL PVVNIKDISR 
RMSIGEAKAR RAKKEMVEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM KAVDKFEYRR 
GYKFSTYATW WIRQAITRSI ADQARTIRIP VHMIETINKL NRISRQMLQE MGREPLPEEL 
AERMQMPEDK IRKVLKIAKE PISMETPIGD DEDSHLGDFI EDNTLELPVD SATSTSLKFA 
TNDVLAGLTP REAKVLRMRF GIDMNTDHTL EEVGKQFDVT RERIRQIEAK ALRKLRHPSR 
SEVLRSFLDE