Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2632 |
Symbol | pilD |
ID | 6988978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 2848634 |
End bp | 2849521 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643380902 |
Product | type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD) |
Protein accession | YP_002263970 |
Protein GI | 209696040 |
COG category | [N] Cell motility [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGCTT TTGAATACTA CCCTTGGCTC TTTCCTCTCT TTGCTACTTT ATTTGGCCTA CTCGTCGGTA GCTTTTTAAA TGTGGTCATC TACCGTTTAC CCATAATGAT GGAAAAAGAA TGGAAAAAAG AATGCACTGA GTGCTTTCCT GATTTGAAAT CCACACCAAA AACAGCGGAT ATAGAAGAAA AATTCAATCT AAGTGTTCCT CGTTCACGCT GCCCTAAATG CAATACTCAA ATAAAATTTT ACGATAACAT TCCCGTTATT AGCTGGTTGT TGTTGCGTGG AAAATGCCGT CAATGCAGTA ATCCTATTAG CTTCCGTTAT CCTGCCATTG AGCTTCTGTC AGGCGCAATG TGTTTTGGCG TCTCTTACTT ATTACCATTT TCTTATTTTG CTATTGCTGC CGTTCTTTTT ACTCTAACGC TTATTGCATT AACCTTTATT GATATCGATA CCATGTTACT CCCCGATCAA ATAACGCTGC CATTACTGTG GACTGGCCTA TACTTATCCT TAGTCGGTTG GAGTTCAGTC AGCTTAATGG ATTCGGTCAT TGGAGCCATG GCTGGTTATT TAATATTATG GTCCATTTAT TGGGCATTTA AATTATTAAC CGGTAAAGAA GGCATGGGTT ATGGGGACTT TAAATTATTA GCCGCACTTG GTGCTTGGCT TGGTTGGCAA CAATTGCCAT TAATCGTTTT ATTGTCTTCT ATTGTTGGTG CCATCATTGG CATTGCAATG TTAAGGGCAC AAAAAAATGG GTATGACAAA GCCATTCCAT TTGGTCCTTA TCTCGCGATT GCAGGTTGGA TATGTTTATT GTGGGGCCAA GAAATTAGCC AATGGTACTT CACCTCAATT CTAGGGTTTC CCGTATGA
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Protein sequence | MAAFEYYPWL FPLFATLFGL LVGSFLNVVI YRLPIMMEKE WKKECTECFP DLKSTPKTAD IEEKFNLSVP RSRCPKCNTQ IKFYDNIPVI SWLLLRGKCR QCSNPISFRY PAIELLSGAM CFGVSYLLPF SYFAIAAVLF TLTLIALTFI DIDTMLLPDQ ITLPLLWTGL YLSLVGWSSV SLMDSVIGAM AGYLILWSIY WAFKLLTGKE GMGYGDFKLL AALGAWLGWQ QLPLIVLLSS IVGAIIGIAM LRAQKNGYDK AIPFGPYLAI AGWICLLWGQ EISQWYFTSI LGFPV
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