| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2630 |
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| Symbol | pilB |
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| ID | 6988976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2845569 |
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| End bp | 2847260 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643380901 |
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| Product | type IV pilus assembly protein PilB |
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| Protein accession | YP_002263969 |
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| Protein GI | 209696039 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACACCA ACCTAGCTTC AATCTTGCGT CAAGCTGAAC TCATCAGCTT GACGCAAGAA
AATACCATTA TCGAACACGT TCAATCAGGG GCACACACTG TGCCTTCTGC GCTTTTAGCT
GCTCATATTT TTACACCTGA TGAATTAATC AGTCATCTTT CTCAAATTTT TGGTTTGGAT
GTCATTAATG TCGCTCAATA TGATTACGCC ACGTGCTGTC AAAAATTAGG ACTAAGAGAG
CTCATAACCC AACATCAAGC ATTGCCGATT CATTATGATC ACGGCTTGAT TCGACTCGCA
GTGAGTGATC CAAGTATTGC TCAAATTGAG GATGATTTTC GTTTCACTAC CAACAAACAA
ATTGAATTAG TGTTAGCTGA CGAAGGACAG CTTCAAGCGG CCATTCGGCG TCTTTATGGG
AAAGGGTTAT CGGATTCACT GCCATCACAA AATAAAGAAA TCACCCAAGA TGAGCTCGCA
TCACTGGTTG ATATATCAAA TGATGAAATG GTATTCACAG AAGATCTCAG CCAAGACGAC
GCCCCGGTTA CCCGTTTTAT AAACCAAATA TTACTAGAGG CCGTTCGAAA AGGCGTTTCT
GATATTCACT TTGAACCTTA TGAAGAAACT TATCGTGTGC GTTTTCGTTG TGATGGGATT
TTAGTAGAGA ACAGTAGTCC TTCTTCTCAT TTAAGTCGTC ATCTTTCAGC CCGCTTAAAA
ATCATGGCAA AACTTGATAT CGCAGAGCGA CGATTACCAC AAGACGGACG CATCAAACTT
AAACTGAACA GCGAAGTCTC CATTGATATG CGCGTGTCCT CTCTTCCTAC GTTATGGGGA
GAGAAGATTG TTCTTCGATT ATTAGACAGC AGCGCGGCCA GTTTGGATAT CGACAAACTC
GGCTACAGTG ACGCCCAAAA AGAGTTATAC CTAACGGCAT TAAAACGCCC TCAAGGCATG
ATCTTAATGA CGGGCCCGAC CGGCAGTGGC AAAACCGTAT CTCTTTACTC TGGCCTAAAC
ATTTTAAATA CGACAGAAAA AAACATCTCC ACCGCAGAAG ATCCTGTCGA AATAAATCTG
AATGGCATTA ACCAAGTTCA AGTAAACCCT AAAATTGGAT TTACCTTTGC TTACGCCTTG
CGATCATTTC TTCGTCAAGA TCCCGATATT GTAATGGTCG GAGAGATCCG AGATCTAGAA
ACAGCCGAAA TCGCAGTAAA AGCCGCACAA ACTGGGCACT TAGTTCTTTC AACACTTCAT
ACCAACTCAG CGGCAGAAAC AGTGGTACGT TTAGGAAATA TGGGGATCGA GAATTTTAAC
CTTGCCTCCT CTCTTACTCT TATCATTGCT CAACGATTAG CAAGAAGGCT TTGCCCTCAT
TGCAAAGCTA TCGATCCATT AACCCCAGAG ATCAGAGAAG AATATGGTAT TGATTTATTA
GGCACTGTTT TTCAAGCGCA CACTGAAGGC TGTAATGAAT GTACGCATGG CTATTCAGGG
CGAATTGGTA TTTACGAAGT GATGCCCTTT ACCCGAGAGC TTTCCATTGC GATTTTAAAA
GGCGCAACGG TAAGACAGAT TGAACAACTT GCTATCAAGC AAGGCATGGA TAATTTAGCC
ACATCAGGAA TTAAACGCCT CGAAGATGGT ACAACCAGCT TACAAGAATT AACTCGTGTT
CTGTATTTTT AA
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| Protein sequence | MHTNLASILR QAELISLTQE NTIIEHVQSG AHTVPSALLA AHIFTPDELI SHLSQIFGLD
VINVAQYDYA TCCQKLGLRE LITQHQALPI HYDHGLIRLA VSDPSIAQIE DDFRFTTNKQ
IELVLADEGQ LQAAIRRLYG KGLSDSLPSQ NKEITQDELA SLVDISNDEM VFTEDLSQDD
APVTRFINQI LLEAVRKGVS DIHFEPYEET YRVRFRCDGI LVENSSPSSH LSRHLSARLK
IMAKLDIAER RLPQDGRIKL KLNSEVSIDM RVSSLPTLWG EKIVLRLLDS SAASLDIDKL
GYSDAQKELY LTALKRPQGM ILMTGPTGSG KTVSLYSGLN ILNTTEKNIS TAEDPVEINL
NGINQVQVNP KIGFTFAYAL RSFLRQDPDI VMVGEIRDLE TAEIAVKAAQ TGHLVLSTLH
TNSAAETVVR LGNMGIENFN LASSLTLIIA QRLARRLCPH CKAIDPLTPE IREEYGIDLL
GTVFQAHTEG CNECTHGYSG RIGIYEVMPF TRELSIAILK GATVRQIEQL AIKQGMDNLA
TSGIKRLEDG TTSLQELTRV LYF
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