| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2603 |
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| Symbol | hrpB |
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| ID | 6988829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2818175 |
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| End bp | 2820640 |
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| Gene Length | 2466 bp |
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| Protein Length | 821 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643380879 |
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| Product | ATP-dependent RNA helicase HrpB |
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| Protein accession | YP_002263947 |
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| Protein GI | 209696017 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.587865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCACAGT TGCCGATTGA AAGAGTGATC CCATCACTGA TTGATAAATT ACGAACGCAT
TCACAAGTGA TTTTAAAAGC ATCGACGGGG GCGGGTAAGT CGACTCATTT ACCTCTGATG
TTATTAAAAG AGAATGTCAT CACGGGTAAA ATTATCATGC TAGAACCGAG ACGATTGGCC
GCGAGAAATA TTGCGTCTTA TTTAGCGTCT TTGTTAGGTG AGAAGGTGGG AGAGCAAATC
GGATTTAGAG TTCGTGGTGA GACGAAAGTA AGTAATAAGA CTCGACTTGA AATTGTGACT
GAGGGGATTA TGACTCGAAT GATTCAATCT GATCCTGAAT TATCCGGTGT TGGCCTATTA
ATCTTCGATG AATACCATGA ACGTAGTTTA CATGCAGACA CGGCGTTGGC GTTTGCATTA
GAAGTTCAAG AAGCCTTACG AGAGGATCTT AAGCTACTTG TTATGTCTGC AACATTGGAA
CATGACGCGT TAAAGCAACT TTTACCACAA GCCTGTTATT TAGAATCTGA TGGACGAATG
TTCCCGGTGA CAACGCAATA TCAACCTTTA AAAGTAAATC AAAGAATTGT TGAAGCCACT
GAGTCTTCTA TTCGTAAAAT GTTAGATGAA GAAAAGGGAT CTATTCTTGT TTTTCTTTCT
GGTGCTAGTG AAATTAGACA ATTAGAAGAT AGGCTTAGAA ATGTATCTTC AGATGTGATT
GTTGCTCCAC TTTATGGTCA GCTAGAACCG AAAAAACAAT TACAAGCTTT GCAGCCTGCT
GCGAATGGAA AGAGAAAGGT GGTATTGGCA ACAAACATTG CTGAAACAAG TTTAACAATT
GAAGGGATTA GAATTGTTAT TGATAGTGGT TATGAGCGTA CTGCTACGTT TGATGCGAAA
ACAGGTATTA CTAAACTAGA ACAAAAACGA ATAGCTCAAT CTTCTGCGGA ACAACGAAAA
GGGCGGGCAG GACGCTTAGA AGAAGGGATT TGCCTTCGCT TATACAGTGA ATCTCAATAC
CAACAATTGG CGGTGTCTCA AACGCCAGAG ATTGAGTCTT CGGATTTATC TTCGCTTATC
GTTGAGCTAA CAAAATGGGG GGTGACAGAT CCTCTTGACT TAATGTGGTT AACTCCACCG
CCAGATTCGA ATATGAATCA AGGAAAGGAA TTGTTGTGCT TACTCGGGTT GATTGATCAA
CAAGGTAAAT TGACATTAAA GGGAGAGCAA GCTCAACGAC TGGGTATTGA GCCTAGATTA
GCGACGGTGT TATTACAAGC GAAGGCTCTG TCTAATGAGC ACTTACAGAC CGCATTACAT
ATCTTACCGA TTATTGAAGA GTCCGCTAAA TCAATTAAAT CGAATGATCT TTCCCTTCAT
CTTTCTGTTT TTATAGACGG AAAGTACCCA AAACAACATT ACTATCAGCA AAGAGTCTCT
TGTTTAGCCA AATTGATGGA AGTGGATGTT GATCTACATA ACGTCTCCTT AGCGTTAATT
GGTGAGACAT TAGCGTGTGG TTTTCCTGAT CGTATAGCGA TAGAAAAGGG TGCAGTGGGT
CATTTTCAAT TATCTAATGG TCATGGAGTT CAAATTGATG AAATTGAATC TATTGCCCAG
AGTGAACATT TGGTGGTGGT GGATTTATTA AAAGGAATGC AGAATCGCAG TCAGGTGTTT
TTAGCGGCAA GTTTATCGAG AACATCATTA AATACCGTGT GTGCAAGTTG TATATTTGAT
GTTGAGCATG TGGATTGGGA TGAAAAATCA GGGAGAATGA TTGCAGAAAA GAGAACTTAT
TTAAATAAAA TCCTTTTAAG CAAAGAGCGA ATTTCTTCCC CTGATAAAAA TAAGATAGCA
CATGCGTTAT TATCGATGGT TAAGCGTAAA GGATTAGATT GCTTAGGCTG GAGCTCAACG
ACGTATTCAT TGCTATTACG CTTACGTTGC ATGGCACTGT GGATGCCAGA ATATCCCCTG
CCCCCTATGA ATGATGACGA TTTGTTAAGC CGACTTGATG AGTGGCTATT GCCGTTCATG
AACGGTGTTA ATAACGATAA ACATTTGAAG TCGATTAATT TAAAAGATGC GTTAGAAGCC
TATGTAGGGT GGGAAAACAT TAAGTTGTTA AATGAGTATT TACCTACTCA TTATGTCTTA
CCTACGGGAA CTAAAGCAGC AATTGTGTAT GATCCACAAT ATGAGCCTAA AATATCCGTT
AGAATGCAAG AAGTGTATGG TGAAGCTGAT TCTCCTTTAT TAGCTCAAGG TAAAAAACGT
TTAGTGATGG AGTTACTGTC TCCTGCTCAA CGACCATTAC AAACAACGAG TGACTTAGCT
GGTTTTTGGG CTGGGTCTTA TCGAGAGGTT CAAAAAGAGA TGAAAGGACG CTACCCAAGA
CATATTTGGC CTGATGATCC TGCATCCCAT GCAGCAACAA AGAAAACAAA ACGTCATTTT
AATTAA
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| Protein sequence | MSQLPIERVI PSLIDKLRTH SQVILKASTG AGKSTHLPLM LLKENVITGK IIMLEPRRLA
ARNIASYLAS LLGEKVGEQI GFRVRGETKV SNKTRLEIVT EGIMTRMIQS DPELSGVGLL
IFDEYHERSL HADTALAFAL EVQEALREDL KLLVMSATLE HDALKQLLPQ ACYLESDGRM
FPVTTQYQPL KVNQRIVEAT ESSIRKMLDE EKGSILVFLS GASEIRQLED RLRNVSSDVI
VAPLYGQLEP KKQLQALQPA ANGKRKVVLA TNIAETSLTI EGIRIVIDSG YERTATFDAK
TGITKLEQKR IAQSSAEQRK GRAGRLEEGI CLRLYSESQY QQLAVSQTPE IESSDLSSLI
VELTKWGVTD PLDLMWLTPP PDSNMNQGKE LLCLLGLIDQ QGKLTLKGEQ AQRLGIEPRL
ATVLLQAKAL SNEHLQTALH ILPIIEESAK SIKSNDLSLH LSVFIDGKYP KQHYYQQRVS
CLAKLMEVDV DLHNVSLALI GETLACGFPD RIAIEKGAVG HFQLSNGHGV QIDEIESIAQ
SEHLVVVDLL KGMQNRSQVF LAASLSRTSL NTVCASCIFD VEHVDWDEKS GRMIAEKRTY
LNKILLSKER ISSPDKNKIA HALLSMVKRK GLDCLGWSST TYSLLLRLRC MALWMPEYPL
PPMNDDDLLS RLDEWLLPFM NGVNNDKHLK SINLKDALEA YVGWENIKLL NEYLPTHYVL
PTGTKAAIVY DPQYEPKISV RMQEVYGEAD SPLLAQGKKR LVMELLSPAQ RPLQTTSDLA
GFWAGSYREV QKEMKGRYPR HIWPDDPASH AATKKTKRHF N
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