| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2592 |
|---|
| Symbol | |
|---|
| ID | 6987835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2794974 |
|---|
| End bp | 2796119 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 643380860 |
|---|
| Product | carbohydrate diacid regulator (sugar diacid regulator) |
|---|
| Protein accession | YP_002263938 |
|---|
| Protein GI | 209696008 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTAA CCACTATCAT TGCGAAACAA ATCGTAGAAA GAACAATGAA AATAATTAAG
CATTCAGTCA ATGTCATGGA TGAATACGGC GTGATTATCG GTTCAGGTGA CCAAACAAGA
TTACACTGTC GTCATGAGGG TGCGATTTTA GCGATTAATG AAAATAGAAT CGTCGAAATA
GATAACGCCA CCGCATTACA ATTACGTGGT GTAAAAGCGG GAATAAATCT CCCTATTATT
TTTCAAAATA CGGTTATTGG TGCTGTTGGC GTTTCTGGAA AGCTTTGCGA AATACAACAA
TATGGTGAAC TCGTTAAAAT GACCGCAGAA CTCATCATAG AACAAGCGGC TTTAATGACT
GAAATACAGT GGTCAAAAAG GCACAAAGAA GAATTAGTAC TGCAATTAAT TCAACCTTCA
GATTTAAATA CACAACAACT CAACTCTATT GCAGAGCGGT TAGAACTCGA TCTTCAACAA
CCAAGAATAG CTACAATTAT AAAAGTAGAT TCTTTTAAAG GAGAAAATTT ATCTCTGACT
CACTTACAAA AACTTGTCCA TTTATTGGAA TATCCTGAAC GAGATAATCT GGTTGCTATT
AGTTCAGTTA CATTAAATGA AGTCGTCGTT TTGAAACCAA TCACATTAAC TGAAAATGGT
TGGAACCGTA CTTATGAAGA AAAACGTATT CGCCAACTTT TTCAACGAAT TTCTCATGAT
GAAAAATTTA CGATAAAAAT AGCACTCGGT GATTATTTTC CAACAATAGA AGGACTTGCA
CAGTCCTATA TGACAGCAAA AGCCACAATG AACACTGCAA ACTCAAAAAA TCGAATTCTT
TTTTATCAAG ATAATGTTCT TCCTGTATTA ATTAATGGTC TCAAATCAGA TGATTGGCGC
TCGGAACAAT TGAAACTGCC AATAACAAAA CTTACTGCTC ACGATTCAAA AGGAGTATTA
CTTAAAACGC TCCACGCTTT TTTTAACCAT AATTGTGATT CAGCTCAAAC CTGCAATGCT
CTCCACATAC ATAGAAATAC ATTACGATAC AGATTAGATA ACATACAAAA AGAAACAGGC
TTAGATATCA ATAAGATAAA TGAAATTACA TATTTATATC TAGCGACATT AATGCATGAA
CAATAA
|
|---|
| Protein sequence | MQLTTIIAKQ IVERTMKIIK HSVNVMDEYG VIIGSGDQTR LHCRHEGAIL AINENRIVEI
DNATALQLRG VKAGINLPII FQNTVIGAVG VSGKLCEIQQ YGELVKMTAE LIIEQAALMT
EIQWSKRHKE ELVLQLIQPS DLNTQQLNSI AERLELDLQQ PRIATIIKVD SFKGENLSLT
HLQKLVHLLE YPERDNLVAI SSVTLNEVVV LKPITLTENG WNRTYEEKRI RQLFQRISHD
EKFTIKIALG DYFPTIEGLA QSYMTAKATM NTANSKNRIL FYQDNVLPVL INGLKSDDWR
SEQLKLPITK LTAHDSKGVL LKTLHAFFNH NCDSAQTCNA LHIHRNTLRY RLDNIQKETG
LDINKINEIT YLYLATLMHE Q
|
|---|
| |