| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2574 |
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| Symbol | rsmC |
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| ID | 6987826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2769232 |
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| End bp | 2770293 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643380843 |
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| Product | ribosomal RNA small subunit methyltransferase C (16S rRNA m2G120 methyltransferase) |
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| Protein accession | YP_002263921 |
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| Protein GI | 209695991 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2813] 16S RNA G1207 methylase RsmC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.661981 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGACAAT CTCGCCAGTT TTTGTATTCT TTCGAGGCCA TTATGTCTTA CTCTGCTCCA
AGTCAAATAA CTCAGCGTCA ACTTGCCTAT TTTGAAGGTA AACACGTACT CATTGCTGGT
GAGCTTAATG ATAATTTCCC TCTTGAGCTA GATAAGCATT GTGCTTCTAC ATCTATCTTT
ACGACCAATT ATGGTTACTA CAAACAATTT TCAGAAAACC CAAAAATTAA CTGTTATTTC
GGAACCGAAT TAATAGAAGA AAGCCATGCA GACATGATTT TACTGTATTG GCCAAAAGCA
AAAGCTGAAG CTGAGTACTT ACTCACTATG CTATTAGCCA AACTAGGAAA AGACACCGAG
ATCATCGTTG TTGGTGAAAA CCGCAGCGGA GTAAAAAGCG TAGAGAAAAT GTTCGCGAAT
TTTGGACCAA TGAACAAACT GGATTCAGCT CGACGTTGCA GCTTTTATTG GGGTCAATGT
ACAGAAACGG CGCCAAGCTT TAACTTACAA GATTGGTTTA AAGAATATCA AGTTCAATTT
AAAGAACACA CGATTGAAGT AAGAAGCTTA CCTGGTGTAT TTAGCCATGG TGAATTTGAT
AAAGGTTCAG AGTTACTGCT TCAAACTCTG CCAAGTTTAC GTGGTCATGT TTTAGATTTT
GGTTGTGGTG CCGGCGTGTT AGGTTCTGTA ATGAAAACCA TTAATCCGAA AATCCACTTA
GATATGGTTG ATATTAGTGC GTTCGCAATT GCTTCTTCCA TTGAGACATT AAAAGCCAAT
GGATTAGAAG GGAATGTATT TGCAAGTGAC GTATATTCTG ACACGAAACA AAACTACCAA
TTTATCGTCA GCAATCCACC TTTTCATGCT GGGCTAAAAA CACATTATTC TTCAACCGAA
GAGTTGCTTC AAAAAGCACC GCAAAATTTA ACTCATAGCG GTCAAATGAT TTTTGTCGCT
AATAGCTTTC TACAATATCC ACCAATTGTT GAAAAAGTAT TTGGTCATTG CAACACATTA
GCAAAGAATA ATAAATTCAG AATTTATTCC GCACAAAAGT AA
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| Protein sequence | MGQSRQFLYS FEAIMSYSAP SQITQRQLAY FEGKHVLIAG ELNDNFPLEL DKHCASTSIF
TTNYGYYKQF SENPKINCYF GTELIEESHA DMILLYWPKA KAEAEYLLTM LLAKLGKDTE
IIVVGENRSG VKSVEKMFAN FGPMNKLDSA RRCSFYWGQC TETAPSFNLQ DWFKEYQVQF
KEHTIEVRSL PGVFSHGEFD KGSELLLQTL PSLRGHVLDF GCGAGVLGSV MKTINPKIHL
DMVDISAFAI ASSIETLKAN GLEGNVFASD VYSDTKQNYQ FIVSNPPFHA GLKTHYSSTE
ELLQKAPQNL THSGQMIFVA NSFLQYPPIV EKVFGHCNTL AKNNKFRIYS AQK
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