| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2531 |
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| Symbol | rpoE |
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| ID | 6987800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2713011 |
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| End bp | 2713589 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643380795 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_002263879 |
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| Protein GI | 209695949 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGAGC AGTTAACCGA TCAGGTATTG ATTGAGCGAG TTCAAAGAGG CGACAAGCAA
GCTTTTAATC ATTTGGTGAT TAAGTACCAA AATAAAGTCT GTAATCTTGT CGCTCGTTAC
GTAAAAAATA GTGGTGATGT TCCTGATGTA GCTCAAGAAG CGTTCATTAA GGCCTACCGA
GCGTTACCAA CGTTCCGAGG TGATAGTGCG TTTTATACTT GGCTTTATCG GATAGCGGTC
AATACAGCAA AAAATTATTT AGTTGCTCAG GGAAGAAGGC CTCCAGCATT TGATGTTGAT
GCCGAAGATG CCGAATATTA TGAAGGGGCG AGTGCATTAA AAGAAATTAC GAACCCTGAG
AATTTATCGT TGTCTGAAGA GTTACGACAA ATTGTATTTT CGACGATCGA TGCGTTACCT
GAAGATTTAA AAACAGCAAT AACATTACGA GAGCTAGAAG GGCTAAGTTA TGAAGATATT
GCTGCGATAA TGGAGTGTCC GGTTGGTACG GTTCGTTCTC GTATTTTCCG AGCTCGTGAA
GTCGTCGAGA AGAAAATTCA ACCGCTAATG CAGCGTTAA
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| Protein sequence | MSEQLTDQVL IERVQRGDKQ AFNHLVIKYQ NKVCNLVARY VKNSGDVPDV AQEAFIKAYR
ALPTFRGDSA FYTWLYRIAV NTAKNYLVAQ GRRPPAFDVD AEDAEYYEGA SALKEITNPE
NLSLSEELRQ IVFSTIDALP EDLKTAITLR ELEGLSYEDI AAIMECPVGT VRSRIFRARE
VVEKKIQPLM QR
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