Gene VSAL_I2525 details

Gene Information

• Locus tag: VSAL_I2525
• Symbol: rnc
• ID: 6988456
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 2707308
• End bp: 2707979
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643380789
• Product: ribonuclease III
• Protein accession: YP_002263873
• Protein GI: 209695943
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0485221
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATCTC CATTACAACG CCTAGAACGC AAAATAGGCT ATAAATTTAA TGATGAAGGC 
TTTCTTAAGT TAGCACTGAC TCACCGTAGT GCTAACGGAA CTCATAATGA ACGTTTAGAA 
TTTCTAGGCG ATTCAATTTT GAGCTTTGTG GTTGCTGATG AACTTTATCA CCGTTTTCCT 
AAAGTGGATG AAGGTGATAT GAGTCGTATG CGTGCAACGC TAGTTCGTGG TCATACTCTT 
GCTGAGTTAG GTCGTGAATT TGAGTTAGGG GATTACCTAT TTTTAGGCCC TGGCGAATTG 
AAAAGCGGTG GCTTCCGTCG AGATTCAATT TTAGCGGATG CGGTTGAAGC GATCATTGGT 
GGTATTTATC TTGATAGTGA TACCGAAGTC ATTCGTCGAA TTATTTTAGC ATGGTACAAA 
ACACGCTTAG ATTCGATTGA ACCAGGTATC TCTCAAAAAG ATCCAAAAAC ACGTCTTCAA 
GAATACCTAC AAGGTCGTCG TAAGCCGTTA CCAACGTACA CTGTGACAAA AATTAAAGGT 
GAAGCTCATA ATCAAGAGTT CACTATTGAA TGTATCGTAG CAGGCTTGGA TAAGCCTGTT 
ATCGGCAAAG GAAGCAGTCG CCGCAAGGCA GAACAGTCGG CTGCTGACAT AGCATTAGGA 
CAAGTAAACT AA 

 

Protein sequence

MTSPLQRLER KIGYKFNDEG FLKLALTHRS ANGTHNERLE FLGDSILSFV VADELYHRFP 
KVDEGDMSRM RATLVRGHTL AELGREFELG DYLFLGPGEL KSGGFRRDSI LADAVEAIIG 
GIYLDSDTEV IRRIILAWYK TRLDSIEPGI SQKDPKTRLQ EYLQGRRKPL PTYTVTKIKG 
EAHNQEFTIE CIVAGLDKPV IGKGSSRRKA EQSAADIALG QVN