Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2520 |
Symbol | varS |
ID | 6989215 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 2701550 |
End bp | 2704339 |
Gene Length | 2790 bp |
Protein Length | 929 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643380784 |
Product | hybrid sensory histidine kinase BarA |
Protein accession | YP_002263868 |
Protein GI | 209695938 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.314221 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAAAT ACGGCTTACG TGCACGAGTC ATCACACTAA CATTAGCACC AACGTTAATT ATTGGTTTGC TATTAAGTGG CTTTTTCACC ATAAACAGAT ACCACGATCT TGAAACTCAG TTAGTCTCAA GTGGAACCAG TATTATTGAA CCGCTTGCTA TTTCAAGTGA ATACAGCATG ACAGCAAAAA ATCGTGAAGC CGTACGTCGA CTGATCAGCT ATGCGCATCG AAAACACTCA AAAATTGTGC GTAGTATTGC GGTGTTTGAT GAAAATCATG ACCTGTTTGT CACGTCCAAT TTTCATCCTA ACTTTGAAAG CCTCACTTTT CCTAAAGACA AACCTATCCC GCTTCTGCTT GATATTGAAT TTTTAGATGA TTCATTAATT TTAAGAGCGC CAATTTTAGC CGAGGGGCAA TTTACCGCAA ACTTTGATGC TTCCCATGTC AATGAGGCGC TAGGGTATAT TGCTATTGAG CTCGATTTAT CAAGCTTACG ACTCCAGCAA TACCAAGAGA TATTTTCAGC CTTATTAGTC TTAATTTTAG GTCTCAGCTT ATCTGGCGTT TTTGCCTTTC GTTTGATGCA AGACGTAACC CAACCTATTT CACACATGGT AAGTGTTGTT GACCGTATTC GCCGTGGTCA CTTGAATGTG CGTATCGAGA ATAAATTGCA TGGCGAATTA GATACTCTCA AAAACGGCAT CAATGCCATG GCGATTTCTT TATCTGATTA TCATGTTGAA ATGCAACAAA GCATCGACCA AGCGACTTCC GATTTACGAG AAACGTTAGA ACAGCTTGAA ATACAAAACG TAGAGTTAGA CATCGCTAAA AAACGCGCTC AAGAAGCTGC TCGAGTTAAA TCTGAATTTT TAGCAAACAT GTCTCACGAA CTGAGAACAC CACTCAACGG GGTTATTGGT TTTACTCGTC AAATGCTAAA AACATCACTG TCTGATAATC AAAAAGATTA CCTACAAACC ATTGAGCGAT CGGCCAATAA TTTATTGACC ATCATTAATG ACATTCTTGA TTTCTCCAAA TTGGAAGCGG GCAAATTACT GCTAGAGAAT CTACCGTTTG ATTTCCAAGA CAGTTTAGAT GAAGTGGTTA GCTTACTCGC CCCAAGCGCT CACGAAAAAG GATTAGAAAT TACGTTAAAA ATCGACCCTC GCATTCCATC TGGGTTAATT GGTGATCCTT TACGAATTCA GCAAGTACTA AACAATTTGG TTGGTAATTC AATTAAATTT ACAGAAAAAG GCAACATCGA TATCTCCATC GAGTTAAAAC ACCTTAATGA TGACTTTATT GATGTGCAGT TTGTGGTTCG AGATACCGGC ATTGGTATAT CTGAGCGTCA ACAAGCACAA CTATTCCAAG CATTTAGTCA AGCGGATGCG AGTATATCTC GTCGTTATGG TGGTACTGGC CTTGGTCTTG TTATTACTCA AAAACTCGTG TCTCAAATGG GCGGAGAAAT AGGATTAAGC AGTCGTCTTC ATCAGGGATC TACATTCTGG TTTACGATGA GAATGCATCC AACAGAATTA CCAATGATTG ATGAACGAGA TGTCAGCCAA TTAGAGAAGA AAAAACTGCT CTTAATTGAA CCTAATATGC AGTCAGCCTC CATATTACAA CAACAATTTA TTCACCATGG TGTCTTCGTC ACTTACCGTT CTACATTGCC AGACACACTT GAAAATCACG ATTATGCATT AATAAGTTTA AGCTCAAGCG ATAAACCTGA TGCAGAAGCA TTAAAAGCAA TGGTTAAGAA AATTACACCA TATTGCCCAA CAATTGTAAT TGGATTACCA AGTACTGAAC TGACCTTAAC CGAAGAGCTC AATAAATATT CATACATGAC GTGTTTATCA AAACCGTTTG CGAAGAAAAA ACTATTAGAT GCTTTATTAG TACAACCGAA TTCTCAAGTT ATCGAAGCGT TACCTGATTT AATGGCGTCA CATGACGTGC CAAAACGCTT ACCGATCAAA GTGATGGCTG TTGATGATAA CCCAGCAAAC CTTAAGCTAA TCTCAGCATT ACTGCATGAA CAAGTTGAAA GTGTGGTTAC CTGTAAGAAT GGTATTGATG CCGTACAACA AGCAACAGAG CAAAAGTTTG ATATTATTTT GATGGATATT CAAATGCCGA AAATGGACGG CGTAATGGCA TGCAAAGAGA TCCGAAAAAC AGCCCTGAAT TCTGGAACGC CTATTGTTGC GGTAACGGCT CATGCAATGG CCGGTGAACG AGAAAGATTG ATTAGCGAAG GCATGGACGA TTACTTAACA AAGCCAATTG AAGAACATGT ACTGCAACAA GTCATCATTC ATTGGAGTCC ATTAACCGAT CATAAGGAAG TAGAAAAAAT CGTTATTCTT CCTGATAATA TTCCTGATAT TACAATTGAT GATCCATCTT GCCCTGCGAC TAGTAGCATT GATTGGAGTG CAGCACTAAA ACAATCAGCA GGAAAAGAAG ATCTCGCAAA AGAAATGTTG CTTATGCTTA TTGAGTTTAT TCCAGAAGTC GATAGCTGGG TGACGAAAGC CATTGATAAA AAAGCAACAG CAGAAGATCT TTGCCACTAT ATCCATAAGC TTCATGGTAG CAGTTCATAT TGTGGGGTAT TACGACTAAA GCAATTGTGT AATTTGATAG AGACGGCGTT ACGACAAGGA CAAGACATTA AAAATATTGA GCCTGAGTTA TTCGAACTTC AAGACGAAAT GGAAAAAGTA ACCTCTGACG CTCAAATCTT ACTTAACTAA
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Protein sequence | MTKYGLRARV ITLTLAPTLI IGLLLSGFFT INRYHDLETQ LVSSGTSIIE PLAISSEYSM TAKNREAVRR LISYAHRKHS KIVRSIAVFD ENHDLFVTSN FHPNFESLTF PKDKPIPLLL DIEFLDDSLI LRAPILAEGQ FTANFDASHV NEALGYIAIE LDLSSLRLQQ YQEIFSALLV LILGLSLSGV FAFRLMQDVT QPISHMVSVV DRIRRGHLNV RIENKLHGEL DTLKNGINAM AISLSDYHVE MQQSIDQATS DLRETLEQLE IQNVELDIAK KRAQEAARVK SEFLANMSHE LRTPLNGVIG FTRQMLKTSL SDNQKDYLQT IERSANNLLT IINDILDFSK LEAGKLLLEN LPFDFQDSLD EVVSLLAPSA HEKGLEITLK IDPRIPSGLI GDPLRIQQVL NNLVGNSIKF TEKGNIDISI ELKHLNDDFI DVQFVVRDTG IGISERQQAQ LFQAFSQADA SISRRYGGTG LGLVITQKLV SQMGGEIGLS SRLHQGSTFW FTMRMHPTEL PMIDERDVSQ LEKKKLLLIE PNMQSASILQ QQFIHHGVFV TYRSTLPDTL ENHDYALISL SSSDKPDAEA LKAMVKKITP YCPTIVIGLP STELTLTEEL NKYSYMTCLS KPFAKKKLLD ALLVQPNSQV IEALPDLMAS HDVPKRLPIK VMAVDDNPAN LKLISALLHE QVESVVTCKN GIDAVQQATE QKFDIILMDI QMPKMDGVMA CKEIRKTALN SGTPIVAVTA HAMAGERERL ISEGMDDYLT KPIEEHVLQQ VIIHWSPLTD HKEVEKIVIL PDNIPDITID DPSCPATSSI DWSAALKQSA GKEDLAKEML LMLIEFIPEV DSWVTKAIDK KATAEDLCHY IHKLHGSSSY CGVLRLKQLC NLIETALRQG QDIKNIEPEL FELQDEMEKV TSDAQILLN
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