| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2520 |
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| Symbol | varS |
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| ID | 6989215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2701550 |
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| End bp | 2704339 |
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| Gene Length | 2790 bp |
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| Protein Length | 929 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643380784 |
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| Product | hybrid sensory histidine kinase BarA |
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| Protein accession | YP_002263868 |
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| Protein GI | 209695938 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.314221 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAAT ACGGCTTACG TGCACGAGTC ATCACACTAA CATTAGCACC AACGTTAATT
ATTGGTTTGC TATTAAGTGG CTTTTTCACC ATAAACAGAT ACCACGATCT TGAAACTCAG
TTAGTCTCAA GTGGAACCAG TATTATTGAA CCGCTTGCTA TTTCAAGTGA ATACAGCATG
ACAGCAAAAA ATCGTGAAGC CGTACGTCGA CTGATCAGCT ATGCGCATCG AAAACACTCA
AAAATTGTGC GTAGTATTGC GGTGTTTGAT GAAAATCATG ACCTGTTTGT CACGTCCAAT
TTTCATCCTA ACTTTGAAAG CCTCACTTTT CCTAAAGACA AACCTATCCC GCTTCTGCTT
GATATTGAAT TTTTAGATGA TTCATTAATT TTAAGAGCGC CAATTTTAGC CGAGGGGCAA
TTTACCGCAA ACTTTGATGC TTCCCATGTC AATGAGGCGC TAGGGTATAT TGCTATTGAG
CTCGATTTAT CAAGCTTACG ACTCCAGCAA TACCAAGAGA TATTTTCAGC CTTATTAGTC
TTAATTTTAG GTCTCAGCTT ATCTGGCGTT TTTGCCTTTC GTTTGATGCA AGACGTAACC
CAACCTATTT CACACATGGT AAGTGTTGTT GACCGTATTC GCCGTGGTCA CTTGAATGTG
CGTATCGAGA ATAAATTGCA TGGCGAATTA GATACTCTCA AAAACGGCAT CAATGCCATG
GCGATTTCTT TATCTGATTA TCATGTTGAA ATGCAACAAA GCATCGACCA AGCGACTTCC
GATTTACGAG AAACGTTAGA ACAGCTTGAA ATACAAAACG TAGAGTTAGA CATCGCTAAA
AAACGCGCTC AAGAAGCTGC TCGAGTTAAA TCTGAATTTT TAGCAAACAT GTCTCACGAA
CTGAGAACAC CACTCAACGG GGTTATTGGT TTTACTCGTC AAATGCTAAA AACATCACTG
TCTGATAATC AAAAAGATTA CCTACAAACC ATTGAGCGAT CGGCCAATAA TTTATTGACC
ATCATTAATG ACATTCTTGA TTTCTCCAAA TTGGAAGCGG GCAAATTACT GCTAGAGAAT
CTACCGTTTG ATTTCCAAGA CAGTTTAGAT GAAGTGGTTA GCTTACTCGC CCCAAGCGCT
CACGAAAAAG GATTAGAAAT TACGTTAAAA ATCGACCCTC GCATTCCATC TGGGTTAATT
GGTGATCCTT TACGAATTCA GCAAGTACTA AACAATTTGG TTGGTAATTC AATTAAATTT
ACAGAAAAAG GCAACATCGA TATCTCCATC GAGTTAAAAC ACCTTAATGA TGACTTTATT
GATGTGCAGT TTGTGGTTCG AGATACCGGC ATTGGTATAT CTGAGCGTCA ACAAGCACAA
CTATTCCAAG CATTTAGTCA AGCGGATGCG AGTATATCTC GTCGTTATGG TGGTACTGGC
CTTGGTCTTG TTATTACTCA AAAACTCGTG TCTCAAATGG GCGGAGAAAT AGGATTAAGC
AGTCGTCTTC ATCAGGGATC TACATTCTGG TTTACGATGA GAATGCATCC AACAGAATTA
CCAATGATTG ATGAACGAGA TGTCAGCCAA TTAGAGAAGA AAAAACTGCT CTTAATTGAA
CCTAATATGC AGTCAGCCTC CATATTACAA CAACAATTTA TTCACCATGG TGTCTTCGTC
ACTTACCGTT CTACATTGCC AGACACACTT GAAAATCACG ATTATGCATT AATAAGTTTA
AGCTCAAGCG ATAAACCTGA TGCAGAAGCA TTAAAAGCAA TGGTTAAGAA AATTACACCA
TATTGCCCAA CAATTGTAAT TGGATTACCA AGTACTGAAC TGACCTTAAC CGAAGAGCTC
AATAAATATT CATACATGAC GTGTTTATCA AAACCGTTTG CGAAGAAAAA ACTATTAGAT
GCTTTATTAG TACAACCGAA TTCTCAAGTT ATCGAAGCGT TACCTGATTT AATGGCGTCA
CATGACGTGC CAAAACGCTT ACCGATCAAA GTGATGGCTG TTGATGATAA CCCAGCAAAC
CTTAAGCTAA TCTCAGCATT ACTGCATGAA CAAGTTGAAA GTGTGGTTAC CTGTAAGAAT
GGTATTGATG CCGTACAACA AGCAACAGAG CAAAAGTTTG ATATTATTTT GATGGATATT
CAAATGCCGA AAATGGACGG CGTAATGGCA TGCAAAGAGA TCCGAAAAAC AGCCCTGAAT
TCTGGAACGC CTATTGTTGC GGTAACGGCT CATGCAATGG CCGGTGAACG AGAAAGATTG
ATTAGCGAAG GCATGGACGA TTACTTAACA AAGCCAATTG AAGAACATGT ACTGCAACAA
GTCATCATTC ATTGGAGTCC ATTAACCGAT CATAAGGAAG TAGAAAAAAT CGTTATTCTT
CCTGATAATA TTCCTGATAT TACAATTGAT GATCCATCTT GCCCTGCGAC TAGTAGCATT
GATTGGAGTG CAGCACTAAA ACAATCAGCA GGAAAAGAAG ATCTCGCAAA AGAAATGTTG
CTTATGCTTA TTGAGTTTAT TCCAGAAGTC GATAGCTGGG TGACGAAAGC CATTGATAAA
AAAGCAACAG CAGAAGATCT TTGCCACTAT ATCCATAAGC TTCATGGTAG CAGTTCATAT
TGTGGGGTAT TACGACTAAA GCAATTGTGT AATTTGATAG AGACGGCGTT ACGACAAGGA
CAAGACATTA AAAATATTGA GCCTGAGTTA TTCGAACTTC AAGACGAAAT GGAAAAAGTA
ACCTCTGACG CTCAAATCTT ACTTAACTAA
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| Protein sequence | MTKYGLRARV ITLTLAPTLI IGLLLSGFFT INRYHDLETQ LVSSGTSIIE PLAISSEYSM
TAKNREAVRR LISYAHRKHS KIVRSIAVFD ENHDLFVTSN FHPNFESLTF PKDKPIPLLL
DIEFLDDSLI LRAPILAEGQ FTANFDASHV NEALGYIAIE LDLSSLRLQQ YQEIFSALLV
LILGLSLSGV FAFRLMQDVT QPISHMVSVV DRIRRGHLNV RIENKLHGEL DTLKNGINAM
AISLSDYHVE MQQSIDQATS DLRETLEQLE IQNVELDIAK KRAQEAARVK SEFLANMSHE
LRTPLNGVIG FTRQMLKTSL SDNQKDYLQT IERSANNLLT IINDILDFSK LEAGKLLLEN
LPFDFQDSLD EVVSLLAPSA HEKGLEITLK IDPRIPSGLI GDPLRIQQVL NNLVGNSIKF
TEKGNIDISI ELKHLNDDFI DVQFVVRDTG IGISERQQAQ LFQAFSQADA SISRRYGGTG
LGLVITQKLV SQMGGEIGLS SRLHQGSTFW FTMRMHPTEL PMIDERDVSQ LEKKKLLLIE
PNMQSASILQ QQFIHHGVFV TYRSTLPDTL ENHDYALISL SSSDKPDAEA LKAMVKKITP
YCPTIVIGLP STELTLTEEL NKYSYMTCLS KPFAKKKLLD ALLVQPNSQV IEALPDLMAS
HDVPKRLPIK VMAVDDNPAN LKLISALLHE QVESVVTCKN GIDAVQQATE QKFDIILMDI
QMPKMDGVMA CKEIRKTALN SGTPIVAVTA HAMAGERERL ISEGMDDYLT KPIEEHVLQQ
VIIHWSPLTD HKEVEKIVIL PDNIPDITID DPSCPATSSI DWSAALKQSA GKEDLAKEML
LMLIEFIPEV DSWVTKAIDK KATAEDLCHY IHKLHGSSSY CGVLRLKQLC NLIETALRQG
QDIKNIEPEL FELQDEMEKV TSDAQILLN
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