| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2510 |
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| Symbol | truD |
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| ID | 6989270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2689617 |
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| End bp | 2690663 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643380774 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_002263858 |
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| Protein GI | 209695928 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGACA TCATGTCTAC TTTTTCATGG TTATACGGAA AGCCAGTTGC AACTGGTAAA
TTAAAGCAGC TACCTGAACA CTTTATTGTA AAAGAAGTAT TAGGGTATGA GTTCACTGGT
AAAGGTGAAC ACTTAATGGT TAAAATTCGT AAAACTGGAG AAAACACGAA ATACGTAGCG
AATGAATTCG CTAAGTTTTG TGGTGTTAAA TCAAAAGACA TCAGCTGGGC TGGTTTGAAA
GATCGCCATG CGGTGACTGA ACAGTGGTTA AGCGTTCATC TTCCAAAAAG TGATCACTTG
AATTTTGTTC TATTTGAAGT GGCACACCCT GGTGTTGAAA TTTTAGAAAT GACGCGTCAT
CATAAAAAAT TACGTCCAGG CGATCTTCTC GGAAATAGCT TTCAGTTAAT TGCGACTGAA
GTGACTGATA TGGATGATGT ACTGGCTCGT TTAGAGAAGG TAAAAGTAAC GGGTGTACCA
AACTATTTTG GTGCTCAACG CTTTGGACAT GAAGGCAATA ACGTAACAGA AGCGCGTCGT
TGGGGGCGTG AAAATGTCCG TACTCGTGAT AATACGAAAC GCAGTTTTTA TCTATCAGCA
GCGCGTTCGT GGATTTTTAA CCATATTATT TCTCAAAGAA TAACAGAGGG TTACTTCTCT
CTACCTGTTG ATGGTGATAT TCTACTTGAT CAAAACGATC GTACGGTTAA TGAGAATGTA
ACGTCAGAAG ACTGCATTCA AAAAATTAAA AAGGGTGAAT TATCAATCAG TGCAGCACTT
GCTGGAGATA ATCAACTGCC AACGACAGAG AAAGCATTAA TGTTTGAGCA ACCACAACTG
GATGCTGAAC CAGACTTAAT GGCCTTGATC CGTGGTAACC GTATGCGTCA TGAACGCCGT
AGCATTGAAT TACATCCAGA GAACCTACAT TGGTCTGTGG AAGGCGATCA ACTTACCTTA
AACTTTTCAC TAACATCGGG CAGTTTTGCT ACGGTTATCG TTCGTGAATT GTTACAAGAA
ATTGAAGTTG AACGTACATA CGATTAG
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| Protein sequence | MSDIMSTFSW LYGKPVATGK LKQLPEHFIV KEVLGYEFTG KGEHLMVKIR KTGENTKYVA
NEFAKFCGVK SKDISWAGLK DRHAVTEQWL SVHLPKSDHL NFVLFEVAHP GVEILEMTRH
HKKLRPGDLL GNSFQLIATE VTDMDDVLAR LEKVKVTGVP NYFGAQRFGH EGNNVTEARR
WGRENVRTRD NTKRSFYLSA ARSWIFNHII SQRITEGYFS LPVDGDILLD QNDRTVNENV
TSEDCIQKIK KGELSISAAL AGDNQLPTTE KALMFEQPQL DAEPDLMALI RGNRMRHERR
SIELHPENLH WSVEGDQLTL NFSLTSGSFA TVIVRELLQE IEVERTYD
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