| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2506 |
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| Symbol | rpoS |
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| ID | 6987795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2686176 |
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| End bp | 2687141 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643380770 |
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| Product | RNA polymerase sigma subunit RpoS (sigma-38) |
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| Protein accession | YP_002263854 |
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| Protein GI | 209695924 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTAAAA GCAATGCAGT AACTAAAGTT GAAGAATTTG ATTTAGACGT AGTTGATGAA
ACTGAACTAA CGACAAAGAC AGAAAAAAAA TCTGAACGTC TTGAAGTTAG TAGTTCGCAA
AAAGTAATGG ATGCGACTCA ACTGTACTTA AGTGAAATTG GATTTTCACC ACTTCTAACC
GCTGAAGAGG AAGTGTATTT CAGTCGCCTA GCCTTGAAAG GTGATGTTGC CGCTCGATCT
AGAATGATTG AAAGTAACTT ACGATTAGTG GTGAAAATTG CACGTCGTTA TAACCATCGT
GGTCTTGCTT TATTAGATTT GGTTGAAGAA GGTAATTTAG GTTTAATTCG CGCGGTTGAA
AAATTTGATC CAGAAAGAGG CTTTCGCTTC TCTACTTATG CCACTTGGTG GATACGTCAA
ACGATTGAAC GTGCCATTAT GAACCAAACG AGAACCATTC GTTTACCTAT CCACGTAGTG
AAAGAGTTAA ACGTATACCT GCGTGCCGCT CGTGAGCTAT CCCAAAAATT GGATCATGAA
CCTACACCAG AAGAAATAGC AGAAAAGCTA GATAAACCAG TAAGCGATGT GAGTCGAATG
CTGCGTTTAA ACGAGAGGGT CGCTTCTGTT GATTCAATGG TTGCAGGTGA CTCAGATAAA
GCGCTGCTTG ATATTATTCC GGATACGAAA CATGCCGATC CTGAATCCGA AACACAAACA
AACGATATTA ACGAATCTTT AGTTGGCTGG TTAGGTCAAT TAAATCCAAA ACAAAAAGAA
GTCGTTGCAC GTCGTTTTGG ACTGTTAGGG TATGAAGCGT CAACGTTAGA ACAGGTAGGC
CGAGAGATTG GTTTAACTCG AGAACGAGTA AGACAAATCC AAGTTGAAGG GTTAAGGCGT
TTAAGAGAAA TAATGACGCA ACAAGGTTTG AATATGGAAA CTCTATTTGC TGTTGATGAC
TTTTAA
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| Protein sequence | MSKSNAVTKV EEFDLDVVDE TELTTKTEKK SERLEVSSSQ KVMDATQLYL SEIGFSPLLT
AEEEVYFSRL ALKGDVAARS RMIESNLRLV VKIARRYNHR GLALLDLVEE GNLGLIRAVE
KFDPERGFRF STYATWWIRQ TIERAIMNQT RTIRLPIHVV KELNVYLRAA RELSQKLDHE
PTPEEIAEKL DKPVSDVSRM LRLNERVASV DSMVAGDSDK ALLDIIPDTK HADPESETQT
NDINESLVGW LGQLNPKQKE VVARRFGLLG YEASTLEQVG REIGLTRERV RQIQVEGLRR
LREIMTQQGL NMETLFAVDD F
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