| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2479 |
|---|
| Symbol | smpB |
|---|
| ID | 6987776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2653300 |
|---|
| End bp | 2653785 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643380745 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_002263829 |
|---|
| Protein GI | 209695899 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0209136 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGA AGAAATCAAA AGATAAAGCG GGCAGTAATA CCATTGCTAT GAACAAGCAA
GCTCGCCACG AATATTTCAT TGAAGATGAA ATCGAAGCTG GGGTCGAACT CCAAGGCTGG
GAAGTTAAAT CTCTTCGTTC TGGTAAAGTA AATATCGCGG AAAGCTACGT ATATGTTCGC
GATGGCGAAA TTTTCATTAG TGGTATGAAC ATAACACCAC TGCAAGCAGC ATCGACTCAT
GTTGTTGCGA ACCCTACTCG TGTTCGTAAA CTTTTAATGA GCCGTAAAGA AATTGATAAT
CTAATCGGTC GTGTGAACCG TGAAGGTATG ACGCTTGTTG CTACTACCAT GTACTGGGTT
CGCTCTTGGG CGAAAATAAA AGTTGGTGTA GCAAAAGGTA AGAAACTGCA CGATAAACGT
ACAGATTCAA AAGAAAAAGA CTGGAACAGA GATAAAGCTC GAATTATGAA GAGTAGTTTG
CGTTAA
|
|---|
| Protein sequence | MAKKKSKDKA GSNTIAMNKQ ARHEYFIEDE IEAGVELQGW EVKSLRSGKV NIAESYVYVR
DGEIFISGMN ITPLQAASTH VVANPTRVRK LLMSRKEIDN LIGRVNREGM TLVATTMYWV
RSWAKIKVGV AKGKKLHDKR TDSKEKDWNR DKARIMKSSL R
|
|---|
| |