Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2433 |
Symbol | secD |
ID | 6989235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 2604648 |
End bp | 2606504 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643380703 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002263787 |
Protein GI | 209695857 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTAAACC GTTTCCCTTT ATGGAAGTAT TTGATGGTAG TTTCTGTACT ACTTATCGCC GCTCTGTATG CGCTTCCAAA CCTTTATGGT GAAGATCCAG CCGTTCAAAT CACGGGTAGT CGTGGTGCTG AGGTTCAAAC CTCTACGCTG GATGTCGTTG CTGAAAATTT AAAAAACAAT AACATCGCTT ATAAGTCTAT TGCATTCGAA AATGGCAGTG TTCTTGTTCG CTTTAAAGAT ACTGACTCTC AGATCAGTGC CAGAGATATT ATTAGCCAGT CATTAGGTAA ATATTACGTA GTGGCGTTAA ACCTTGCTGC ACTAACGCCT GATTGGTTAA CGTCCATTGG TGCTAAACCA ATGAAGTTAG GCTTAGATTT ACGTGGTGGT GTTCACTTCT TAATGGAAGT GGATATGGAT GCCGCAATGA GCAAACTTGT CGGCCAGCAA GAAGAATCTT TCCGTACTGA TTTACGAGAA GCGAAGATCC GTTATCGTGC TATTCGCAGT TCAGGTAAAG AAAGTGTTGA AGTTGTTCTT CGTAATGCAG AGCAACTAGA AGAAGCCAAG AATGTATTAT CAGATGCGCA TCGTGATATG ACGTTTGTTG ATTCGGAATC AAATGGCCAA TTTAAATTAA TAGCAAGTTT TACTGATCAG CGTTTACAAG AGATCCGTAA TTATGCGGTT GAGCAAAATA TCACGATTAT CCGTAATCGT GTTAATGAAC TTGGTGTTGC TGAACCATTA GTTCAACGTC AAGGTGCAAG CCGAATTGTG GTTGAATTAC CCGGTGTTCA AGACACCGCT CGTGCAAAAG AAATTTTAGG TGCAACGGCG ACACTTGAGT TCCGCGAAGT GGATGACAAA GCGGATTTGT CGGCTGCAGC TAATGGCCGA GCACCGGCAG GAAGCGAAAT AAAAGAAGAT CGAAATGGTC GTCCTGTTGT TCTTAAGAAA CGTATTATTC TTGGTGGAGC GAGCATTACA GATGCAAGTT CAAGTGCTGA TGAATATGGT CGTCCTCAAG TTAACATCTC ACTAGACAGT GAAGGTGGCA GTAAGATGAC GGCGTTCTCT CGTAAAAATA TCGGTAAGCT AATGGCAACC GTATTTACAG AGTATAAAGA CAGCGGTCGT CGCACGCCTG AAGGTCGCGT TATTCTTGCT AAGACAGAAG AAGTGATTAA CCAAGCAACG ATTCAATCAG CTCTTGGTCG TAGTTTCCGT ATTACGGGTA TTGATTCTCA AGCTGAAGCT CATAACTTAG CACTTCTTCT TCGTGCTGGT GCACTAATTG CGCCAATCTC GATTGTTGAA GAACGCACGA TTGGTCCATC AATGGGTCAG CAGAATATTG ATATGGGTGT TCAAGCGTGT ATTTGGGGTA TGGTAGCCGT AATGCTATTT ACTCTAATTT ATTATCGTGG CTTTGGTTTG GTTGCTAACT TAGCGCTTGC CGCTAACTTG GTACTTATCA TTGGTGTTAT GTCGATGATC CCTGGAGCGA CAATGACGCT TCCTGGTATT GCCGGTATTG TATTAACTGT TGGTATGGCC GTGGATGCAA ACGTACTTAT CTTTGAACGT ATTCGTGAAG AGTTAAGAGA TGGACGTAAT CCGCAACAAG CGATTCATCA AGGTTATGCA AACGCATTCA GTACGATTGC TGATGCAAAC ATCACGACAT TAATTACAGC GATTATCTTA TTTGCTGTAG GTACTGGTGC GATCAAAGGC TTTGCAGTAA CGCTATCAAT TGGTATTTTG ACTTCAATGT TTACGGCTAT CGTCGGTACT CGTTGTGTTA TTAACTTAGT TTACGGCGGT AAGCGCGTAG ACAAACTGTC GATCTAA
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Protein sequence | MLNRFPLWKY LMVVSVLLIA ALYALPNLYG EDPAVQITGS RGAEVQTSTL DVVAENLKNN NIAYKSIAFE NGSVLVRFKD TDSQISARDI ISQSLGKYYV VALNLAALTP DWLTSIGAKP MKLGLDLRGG VHFLMEVDMD AAMSKLVGQQ EESFRTDLRE AKIRYRAIRS SGKESVEVVL RNAEQLEEAK NVLSDAHRDM TFVDSESNGQ FKLIASFTDQ RLQEIRNYAV EQNITIIRNR VNELGVAEPL VQRQGASRIV VELPGVQDTA RAKEILGATA TLEFREVDDK ADLSAAANGR APAGSEIKED RNGRPVVLKK RIILGGASIT DASSSADEYG RPQVNISLDS EGGSKMTAFS RKNIGKLMAT VFTEYKDSGR RTPEGRVILA KTEEVINQAT IQSALGRSFR ITGIDSQAEA HNLALLLRAG ALIAPISIVE ERTIGPSMGQ QNIDMGVQAC IWGMVAVMLF TLIYYRGFGL VANLALAANL VLIIGVMSMI PGATMTLPGI AGIVLTVGMA VDANVLIFER IREELRDGRN PQQAIHQGYA NAFSTIADAN ITTLITAIIL FAVGTGAIKG FAVTLSIGIL TSMFTAIVGT RCVINLVYGG KRVDKLSI
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