Gene VSAL_I2433 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I2433 
SymbolsecD 
ID6989235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp2604648 
End bp2606504 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content43% 
IMG OID643380703 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002263787 
Protein GI209695857 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAACC GTTTCCCTTT ATGGAAGTAT TTGATGGTAG TTTCTGTACT ACTTATCGCC 
GCTCTGTATG CGCTTCCAAA CCTTTATGGT GAAGATCCAG CCGTTCAAAT CACGGGTAGT
CGTGGTGCTG AGGTTCAAAC CTCTACGCTG GATGTCGTTG CTGAAAATTT AAAAAACAAT
AACATCGCTT ATAAGTCTAT TGCATTCGAA AATGGCAGTG TTCTTGTTCG CTTTAAAGAT
ACTGACTCTC AGATCAGTGC CAGAGATATT ATTAGCCAGT CATTAGGTAA ATATTACGTA
GTGGCGTTAA ACCTTGCTGC ACTAACGCCT GATTGGTTAA CGTCCATTGG TGCTAAACCA
ATGAAGTTAG GCTTAGATTT ACGTGGTGGT GTTCACTTCT TAATGGAAGT GGATATGGAT
GCCGCAATGA GCAAACTTGT CGGCCAGCAA GAAGAATCTT TCCGTACTGA TTTACGAGAA
GCGAAGATCC GTTATCGTGC TATTCGCAGT TCAGGTAAAG AAAGTGTTGA AGTTGTTCTT
CGTAATGCAG AGCAACTAGA AGAAGCCAAG AATGTATTAT CAGATGCGCA TCGTGATATG
ACGTTTGTTG ATTCGGAATC AAATGGCCAA TTTAAATTAA TAGCAAGTTT TACTGATCAG
CGTTTACAAG AGATCCGTAA TTATGCGGTT GAGCAAAATA TCACGATTAT CCGTAATCGT
GTTAATGAAC TTGGTGTTGC TGAACCATTA GTTCAACGTC AAGGTGCAAG CCGAATTGTG
GTTGAATTAC CCGGTGTTCA AGACACCGCT CGTGCAAAAG AAATTTTAGG TGCAACGGCG
ACACTTGAGT TCCGCGAAGT GGATGACAAA GCGGATTTGT CGGCTGCAGC TAATGGCCGA
GCACCGGCAG GAAGCGAAAT AAAAGAAGAT CGAAATGGTC GTCCTGTTGT TCTTAAGAAA
CGTATTATTC TTGGTGGAGC GAGCATTACA GATGCAAGTT CAAGTGCTGA TGAATATGGT
CGTCCTCAAG TTAACATCTC ACTAGACAGT GAAGGTGGCA GTAAGATGAC GGCGTTCTCT
CGTAAAAATA TCGGTAAGCT AATGGCAACC GTATTTACAG AGTATAAAGA CAGCGGTCGT
CGCACGCCTG AAGGTCGCGT TATTCTTGCT AAGACAGAAG AAGTGATTAA CCAAGCAACG
ATTCAATCAG CTCTTGGTCG TAGTTTCCGT ATTACGGGTA TTGATTCTCA AGCTGAAGCT
CATAACTTAG CACTTCTTCT TCGTGCTGGT GCACTAATTG CGCCAATCTC GATTGTTGAA
GAACGCACGA TTGGTCCATC AATGGGTCAG CAGAATATTG ATATGGGTGT TCAAGCGTGT
ATTTGGGGTA TGGTAGCCGT AATGCTATTT ACTCTAATTT ATTATCGTGG CTTTGGTTTG
GTTGCTAACT TAGCGCTTGC CGCTAACTTG GTACTTATCA TTGGTGTTAT GTCGATGATC
CCTGGAGCGA CAATGACGCT TCCTGGTATT GCCGGTATTG TATTAACTGT TGGTATGGCC
GTGGATGCAA ACGTACTTAT CTTTGAACGT ATTCGTGAAG AGTTAAGAGA TGGACGTAAT
CCGCAACAAG CGATTCATCA AGGTTATGCA AACGCATTCA GTACGATTGC TGATGCAAAC
ATCACGACAT TAATTACAGC GATTATCTTA TTTGCTGTAG GTACTGGTGC GATCAAAGGC
TTTGCAGTAA CGCTATCAAT TGGTATTTTG ACTTCAATGT TTACGGCTAT CGTCGGTACT
CGTTGTGTTA TTAACTTAGT TTACGGCGGT AAGCGCGTAG ACAAACTGTC GATCTAA
 
Protein sequence
MLNRFPLWKY LMVVSVLLIA ALYALPNLYG EDPAVQITGS RGAEVQTSTL DVVAENLKNN 
NIAYKSIAFE NGSVLVRFKD TDSQISARDI ISQSLGKYYV VALNLAALTP DWLTSIGAKP
MKLGLDLRGG VHFLMEVDMD AAMSKLVGQQ EESFRTDLRE AKIRYRAIRS SGKESVEVVL
RNAEQLEEAK NVLSDAHRDM TFVDSESNGQ FKLIASFTDQ RLQEIRNYAV EQNITIIRNR
VNELGVAEPL VQRQGASRIV VELPGVQDTA RAKEILGATA TLEFREVDDK ADLSAAANGR
APAGSEIKED RNGRPVVLKK RIILGGASIT DASSSADEYG RPQVNISLDS EGGSKMTAFS
RKNIGKLMAT VFTEYKDSGR RTPEGRVILA KTEEVINQAT IQSALGRSFR ITGIDSQAEA
HNLALLLRAG ALIAPISIVE ERTIGPSMGQ QNIDMGVQAC IWGMVAVMLF TLIYYRGFGL
VANLALAANL VLIIGVMSMI PGATMTLPGI AGIVLTVGMA VDANVLIFER IREELRDGRN
PQQAIHQGYA NAFSTIADAN ITTLITAIIL FAVGTGAIKG FAVTLSIGIL TSMFTAIVGT
RCVINLVYGG KRVDKLSI