| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2421 |
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| Symbol | dxr |
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| ID | 6988436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2591804 |
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| End bp | 2593006 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643380691 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_002263775 |
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| Protein GI | 209695845 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0276419 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGCAAGT TAACCGTTCT TGGGGCTACA GGCTCTATTG GTAGTAGTAC ACTTTCAGTC
GCAAAACAAA ATTCACATCA ATTTGAAATC GTTGCTCTCG GTGCGGGTTC AAATGTACAA
AAGATGTTTG AACTATGTTG TGAGTGGCAA CCTAAATATG CGGCGATGGC CGATCCAATT
TCTGCTTTAG CTCTTCAACG CCAACTAAAA TCAAACTCGA TAAGAACTGA CGTTTTTTCT
GGAGAAGAAG GTCTATGCCA TATTGCTCAA CTTGATGAAG TTGATACTGT TATGGCTGCT
ATTGTCGGTG CTGCTGGCTT ACTACCGACC ATGTCTGCTG TTAAAGCGGG CAAACGTATT
CTATTAGCGA ATAAAGAAGC GTTGGTGATG TCGGGTCAAT TATTTATTGA TGCTGTTGAA
AAATATGGGG CCGAATTACT CCCTGTTGAT AGTGAACACA ATGCTATATT TCAATGTTTA
CCAGAATCAA TTCAAAGGAA ATTAGGGCGT TGTGATTTAG ATGCTCATGG TGTGAGTTCT
ATTTTATTAA CCGGTTCTGG TGGTCCATTT CGATATACTG ATATTTCAGA ATTAGTGTCA
GTGACGCCAG AAATGGCAAT TGCTCATCCT AATTGGTCTA TGGGGCCTAA AATATCCGTT
GATTCAGCAA CGATGATGAA TAAAGGATTA GAGTACATTG AAGCTCGTTG GTTATTCAAC
ACCACAAAAG AGCAACTAAA AGTAATTATT CATCCTCAAT CTGTTATTCA TTCTATGGTC
CAATATAAAG ACGGTTCTGT ATTAGCTCAA ATGGGACTGC CAGACATGAG AACACCAATA
GCGTGTACCA TGTCTTACCC TGAGCGTATT AGTTCAGGTG TTGAACCTCT TGATTTCACT
AAAATTGGAG AGCTTTCTTT TTTAGAACCA GATTACTCTC GTTACCCTTG CTTAAAATTA
GCTATTGATG CGTGTTACTC AGGTCAGCAT GCGACAACGG GATTGAATGC GGCAAATGAA
CAGTCGGTTG CCGCATTTTT AAACAATGAA ATTGGTTTTA CGGATATCAC TCGAATTAAT
GAGCAGGTTT TGAACAAAGT ATGTGCAAAC TTCCAAAACC TTGAGCTAGA TAGCTTGGAA
AGCCTGATCG ACCTAGATAG AATGGCGCGT AATTATGCCG ATGAGGCTCT TAAAAAGGTT
TAA
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| Protein sequence | MRKLTVLGAT GSIGSSTLSV AKQNSHQFEI VALGAGSNVQ KMFELCCEWQ PKYAAMADPI
SALALQRQLK SNSIRTDVFS GEEGLCHIAQ LDEVDTVMAA IVGAAGLLPT MSAVKAGKRI
LLANKEALVM SGQLFIDAVE KYGAELLPVD SEHNAIFQCL PESIQRKLGR CDLDAHGVSS
ILLTGSGGPF RYTDISELVS VTPEMAIAHP NWSMGPKISV DSATMMNKGL EYIEARWLFN
TTKEQLKVII HPQSVIHSMV QYKDGSVLAQ MGLPDMRTPI ACTMSYPERI SSGVEPLDFT
KIGELSFLEP DYSRYPCLKL AIDACYSGQH ATTGLNAANE QSVAAFLNNE IGFTDITRIN
EQVLNKVCAN FQNLELDSLE SLIDLDRMAR NYADEALKKV
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