Gene VSAL_I2417 details

Gene Information

• Locus tag: VSAL_I2417
• Symbol: lpxD
• ID: 6988471
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 2586375
• End bp: 2587394
• Gene Length: 1020 bp
• Protein Length: 339 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643380687
• Product: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• Protein accession: YP_002263771
• Protein GI: 209695841
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• TIGRFAM ID: [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTCGTA TTACGCTTGC TAAATTGGCA GAAAAATTAG GTGCAACCGT TCATGGTAAC 
GGTGATGTTA TTGTACATTC GATTGCTTCG ATGAATAAAG CAAGAGAAGG AGACATTACG 
TTTCTTTCGA ATGCAAAATA TCGTAAGCAG TTAGCTGAGT GCCAAGCATC TGCAGTAATA 
GTAAAAGAAG CAGATGTTGA ATTTTGCCAA TCGAATGCAT TAATAATGCG AGACCCATAT 
TTAGGCTTTG CTCTAGCTGC ACAGGCATTG GATACAACGC CTGCACCAGC TACGGATATC 
GCCCCTTCAG CTTATATTGC AGCTGATGCA ATTATTGGTA AAGGGGTCGC TATTGGACAC 
AATGCAGTCA TTGAGTCAAA AGCGGTGATT GCAGATGGAG CGATTATTGG TTCTGGTTGT 
TTTATTGGAC AAGAAGCAAA GATAGGTGAA AATACCAAGC TTTGGGCTAA TGTTTCAATC 
TATCATCGAG TTGAAATCGG AAAATCCTGT TTAGTACAAG CTGGCACTGT TATTGGTTCT 
GATGGTTTTG GTTATGCAAA CGATCGTGGC ACTTGGGTTA AGATCCCACA ATTAGGCACT 
GTTATTATTG GTGATAATGT GGAAATTGGT GCAAATGCAG CAATTGACCG TGGTGCGATT 
GATAATACGA TTATTGAAAG TAATGTAATT ATTGATAATC ACATTCAAAT CGCTCATAAC 
GTACAAATCG GATCTGGTTC AGCGATGGCT GGTGGTACTA TTGTTGCCGG CAGCACAAAA 
ATTGGTAAAC ATTGTATCAT CGGTGGCGGT TCGGTTATTA ACGGTCACAT TGAAATCACA 
GATGGCGTAA CGATTACTGG CATGGGAATG GTAATGAGAG GCATCTCTGA GAAGGGAATG 
TACTCATCTG GTATTCCACT TCAGCCGAAT AAAGAATGGC GTAAAACCGC GACACGAGTT 
CATAAAATTG ATGATATGAA TAAGCGTTTG AAAGCGGTAG AAAAAAAACT GGTTGATTAA 

 

Protein sequence

MTRITLAKLA EKLGATVHGN GDVIVHSIAS MNKAREGDIT FLSNAKYRKQ LAECQASAVI 
VKEADVEFCQ SNALIMRDPY LGFALAAQAL DTTPAPATDI APSAYIAADA IIGKGVAIGH 
NAVIESKAVI ADGAIIGSGC FIGQEAKIGE NTKLWANVSI YHRVEIGKSC LVQAGTVIGS 
DGFGYANDRG TWVKIPQLGT VIIGDNVEIG ANAAIDRGAI DNTIIESNVI IDNHIQIAHN 
VQIGSGSAMA GGTIVAGSTK IGKHCIIGGG SVINGHIEIT DGVTITGMGM VMRGISEKGM 
YSSGIPLQPN KEWRKTATRV HKIDDMNKRL KAVEKKLVD