| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2412 |
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| Symbol | dnaE |
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| ID | 6988209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2579669 |
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| End bp | 2583148 |
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| Gene Length | 3480 bp |
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| Protein Length | 1159 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643380682 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_002263766 |
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| Protein GI | 209695836 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAAA CCAAATTCGT ACACCTTAGG GTACACAGTG ATTTCTCCTT AATTGATGGG
CTTTCAAAGG TTCCACCATT AGTTAAAAAG ATGGCTGAGT TAAATATGCC AGCGATGGGG
TTGACTGACT TTACCAACTT GTGTGGTTTG GTTAAATACT ATTTTGCAGC ACATGGTGCA
GGTATTAAAC CGATTATTGG TGCTGACTTT AAAGTTCAAT CAACAGAGTT TGGTAATGAA
CTGTTTAATT TGACCGTTTT GGCAAAAAAT AATGAAGGTT ATAAAAACCT GACTTTATTG
ATATCAAAAG CTTATTTGCG TGGCCATGTT CAACATACCC CTGTTATGGA TAAAGAGTGG
TTAATTGAAC ATAAAGAAGG ATTAATTATC CTTTCTGGTG CGAAAAATGG GGATGTAGGT
AAAGCCTTAT TAAAAGGTAA TCAAGAATTA GTTAATGAAT GTGTCGATTT TTACAAAACG
TATTTTCCTG ATCATTATTA TTTAGAATTG ATCCGGACAG GGCGTGTTGA CGAAGACAGC
TATCTTCATT TTGCTGTTGA TCTTGCTGAA AAAGAAGGGT TGCCAGTTGT AGCAACAAAT
GATGTTTGTT TTATCAAAGC CGATGATTTT GATGCTCATG AGATCCGTGT CGCGATTCAT
GATGGCTTTA CTTTAGAAGA TCCTCGTCGA CCTAAAAACT ACAGTTCACA ACAGTATTTG
AGAACGGAAG AGGAGATGTG TGAGCTTTTT GCTGACATCC CAGAAGCGTT AGAAAACAGT
GTTGAGATAG CCAAGCGTTG TAATGTTACC GTTCGTTTAG GTGAATACTT TCTGCCTAAC
TTCCCAACGG AAGGAATGAA GATTGAAGAT TTCCTCGTCA AGAAATCTCA AGAAGGATTA
GAAAGACGTT TAGCCTTTTT GTTCCCAGAT GAAAAAGTAC GTTTAGAGCG TCGACCAGAA
TACGATGAAC GTCTGCAAAT AGAACTCGAT GTAATTAACC AAATGGGATT CCCTGGTTAT
TTCTTGATCG TAATGGAGTT TATCCAGTGG TCAAAAGATA ACTTAATTCC AGTTGGACCT
GGGCGAGGGT CAGGTGCTGG TTCACTTGTT GCCTATGCGT TAGATATTAC CGATCTCGAT
CCACTTGAAT ATGACCTGTT ATTCGAACGA TTCTTGAACC CTGAGCGTGT CTCGATGCCC
GATTTCGATA TCGACTTCTG TATGGATAAG CGTGATAAGG TTATTGAGCA CGTTGCTGAA
ATATATGGTC GTGATGCGGT ATCCCAAATT ATTACCTTTG GTACGATGGC GGCTAAAGCG
GTAATTCGAG ATGTTGGTCG AGTGCTTGGT CATCCTTATG GTTTTGTTGA TCGTCTTTCA
AAGTTAATAC CGACAGATCC TGGTATGACG TTAGCGAAAG CTTTTGAAGC AGAACCACAA
CTGCCTGAAC TGTATAATGC AGATGAAGAA GTTCGTGCTC TTATCGATAT GTGTAGAATC
TTAGAAGGTT GTACACGAAA TGCAGGTAAG CATGCGGGTG GTGTTGTTAT TTCACCAACG
ACGATTACGG ATTTCTCACC ATTGTATTGT GATGCGGATG GTAATTTCCC TGTTACACAG
TTTGATAAGA ATGATGTTGA AACCGCAGGT TTAGTTAAAT TCGACTTCTT AGGCCTACGA
ACCTTAACGA TCATTGATTG GGCGTTGGGT TTAATTAACC CTCGACGAGA AAAAGAAGGA
AAAGAAGCGG TTCGAATCGA ATCGATCCCT CTTGACGATC AAGCGTCCTT TAAGTTGTTA
CAAAATTCAG AAACGACCGC GGTATTCCAG TTAGAATCTC GTGGAATGAA AGATCTGATC
AAGCGATTAC AGCCCGATAG CTTTGAAGAT ATCATCGCTT TGGTGGCACT TTTCCGTCCT
GGTCCTTTGC AATCAGGGAT GGTAGATAAC TTTATTGACC GTAAACATGG TCGTGAAGAG
GTGTCTTATC CTGATGTAAA TTGGCAGCAT GAGTCATTAA AAGAAACGCT AGAACCAACG
TACGGCATTA TTTTATACCA AGAACAAGTA ATGCAAATTG CACAGATCTT AGCGGGTTAT
ACGCTAGGTG GCGCCGATAT GCTTCGTCGT GCTATGGGTA AGAAAAAACC CGAAGAAATG
GCAAAACAGC GTGGTACGTT TAAAGACGGT GCGATTGCGA ATGGCGTAGA TGGCGAGTTG
TCGATGAAAA TCTTCGACTT GGTAGAAAAG TTTGCCGGTT ATGGTTTTAA CAAATCGCAC
TCAGCGGCCT ATGCTCTGGT TTCTTATCAA ACATTATGGT TAAAAACGCA CTATCCAGCC
GAATTCATGG CAGCGGTAAT GACGGCCGAT ATGGATAATA CGGACAAAAT CATCGGCTTA
GTTGATGAAT GTTTTCGTAT GAAACTGAAA GTATTACCGC CAGATGTAAA TGCGGGCCTT
TATCGTTTTA ATGTTGATGA AGATGGCGCC ATTGTTTACG GTATTGGTGC GATTAAAGGG
GTTGGTGAAG GCCCTATTGA AAATATTATC GAAGCACGAA ATAAAGGTGG TTATTTCCGT
GATTTATTCG ATTTTTGTTC TCGAATTGAC ACGAAAAAAA CCAATAAACG TATTGTGGAA
AAATTAATTC GTTCTGGTGC TTTGGATCGC CTTGGTCCTC ATAGAGCCGC ATTAATGGCA
TCGGTAGAAG ATGCAATGAA GGCGGCAGGT CAACACCATC AAGCAGAATC GTTTGGGCAA
TCAGACATGT TTGGGGTATT AACTCAAGCA CCAGAAGAAG TCGAACAAGC TTATACGCAT
GTTCCGCGAT GGCCAGAGAA AGTATGGCTT GAAGGGGAGC GGGAAACCTT AGGTCTTTAT
CTAACGGGGC ACCCCGTTAA TGCGTACATT AAAGAATTGT CTCGATATAC AACGTGGCGT
TTGAATGATG CTCACGTTAC GAGACGCGAT CAAACTGTAA CGGTTGCAGG TTTAGTTATT
GCTGCTAGAG TAATGACCAC CAAACGAGGC AGTCGTATTG GTTTAATGAC ATTAGATGAC
CGATCTGGCC GAATGGAAGT GATGTTGTTC TCTGATGCCC TTGATCGATA CGCTGATTTG
CTAGAAACTG ACAAAATAGT GCTTGTTTCT GGACAGGTCA GCTTTGATGA TTTCAATGGG
GGGCTTAAAA TGTCTGCCCG TGAAGTGATG TCATTGGGAG ATGCACGAGA AAAATACGCT
CGTGGATTGT CCGTTTCTGT TACCGATGCG CAAATTAACA ACCAATTTTT TGAACGCTTT
AGTCAAATAC TAGAGCCTAA TCGGGCAGGG ACTGTCCCGG TAAACGTATA TTATCAGCGA
GCCGATGCTC GTGTTAAGTT GGTCCTAGGG ACGGAGTGGC GAGTTACGCC AACAGACCAA
CTAATAGATG ATTTGAAGTC GTTGCTTGGC GAACAGCAAG TCGAGCTTGA ATTTAACTAG
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| Protein sequence | MSETKFVHLR VHSDFSLIDG LSKVPPLVKK MAELNMPAMG LTDFTNLCGL VKYYFAAHGA
GIKPIIGADF KVQSTEFGNE LFNLTVLAKN NEGYKNLTLL ISKAYLRGHV QHTPVMDKEW
LIEHKEGLII LSGAKNGDVG KALLKGNQEL VNECVDFYKT YFPDHYYLEL IRTGRVDEDS
YLHFAVDLAE KEGLPVVATN DVCFIKADDF DAHEIRVAIH DGFTLEDPRR PKNYSSQQYL
RTEEEMCELF ADIPEALENS VEIAKRCNVT VRLGEYFLPN FPTEGMKIED FLVKKSQEGL
ERRLAFLFPD EKVRLERRPE YDERLQIELD VINQMGFPGY FLIVMEFIQW SKDNLIPVGP
GRGSGAGSLV AYALDITDLD PLEYDLLFER FLNPERVSMP DFDIDFCMDK RDKVIEHVAE
IYGRDAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRLS KLIPTDPGMT LAKAFEAEPQ
LPELYNADEE VRALIDMCRI LEGCTRNAGK HAGGVVISPT TITDFSPLYC DADGNFPVTQ
FDKNDVETAG LVKFDFLGLR TLTIIDWALG LINPRREKEG KEAVRIESIP LDDQASFKLL
QNSETTAVFQ LESRGMKDLI KRLQPDSFED IIALVALFRP GPLQSGMVDN FIDRKHGREE
VSYPDVNWQH ESLKETLEPT YGIILYQEQV MQIAQILAGY TLGGADMLRR AMGKKKPEEM
AKQRGTFKDG AIANGVDGEL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHYPA
EFMAAVMTAD MDNTDKIIGL VDECFRMKLK VLPPDVNAGL YRFNVDEDGA IVYGIGAIKG
VGEGPIENII EARNKGGYFR DLFDFCSRID TKKTNKRIVE KLIRSGALDR LGPHRAALMA
SVEDAMKAAG QHHQAESFGQ SDMFGVLTQA PEEVEQAYTH VPRWPEKVWL EGERETLGLY
LTGHPVNAYI KELSRYTTWR LNDAHVTRRD QTVTVAGLVI AARVMTTKRG SRIGLMTLDD
RSGRMEVMLF SDALDRYADL LETDKIVLVS GQVSFDDFNG GLKMSAREVM SLGDAREKYA
RGLSVSVTDA QINNQFFERF SQILEPNRAG TVPVNVYYQR ADARVKLVLG TEWRVTPTDQ
LIDDLKSLLG EQQVELEFN
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