Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2353 |
Symbol | ligA |
ID | 6987712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 2526803 |
End bp | 2528812 |
Gene Length | 2010 bp |
Protein Length | 669 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643380625 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_002263709 |
Protein GI | 209695779 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTATTG AAAAAACACT AGATGAGCTT AAAAAACAGC TTAATTATCA CGCTTACCGT TATTATGTTG AAGACAGTCC AGAGCTTCCT GATGCTGAAT ATGATCGAAT GATGCAGCAA CTATTGTTGA TTGAAAAAGA ACACCCAGAG TTCATGACTG TCGACTCTCC AAGCCAGCGC GTTGGTGGTG AAGCATTAGG TGGTTTTACT CAAGTTCAAC ATGAGATCCC TATGTTGTCA TTGGATAATG CATTTAACGA TAATGAACTC GACTCTTTTG AAAAACGCAT TAATGATCGT CTTATTTCGG ATTCGGTTTC CTTGTTTTGT TGTGAGCCTA AGCTTGATGG TTTAGCGGTA AGCCTTTTGT ATGTTGATGG GCTGTTAGTT CAAGCGGGAA CTCGTGGTGA TGGTGCAACA GGCGAAAATA TTACAGAGAA CGTAAGAACT ATTCGTTGCA TACCGCTAAC GTTACAAGGA GAAGGATGGC CAACTCGTTT AGAGGTTCGC GGTGAAGTCT TCATGCCTAA AGCCGGGTTT GATGCGTTAA ATGAAAGAGC GCTAAAACGT GCTGAGAAGC CATTTGCTAA CCCCCGTAAT GCGGCCGCTG GCAGTTTGCG TCAACTTGAT TCAAAAATCA CAGCAACTCG CCCATTGAGC TTTTATGCAT ATAGTGTAGG AATCATTGAG GGGGGGGAGC TAGAAGGCAG TCATTATCAA CGGTTTGTTC AGTTAAAAAA CTGGGGTTTA CCTATGTGTG AAGAGACAAA ACAATGCCAC TCACTGACCG ATGTAAAAGC ATATTATAAA GACATTCTCG AGCGTCGAGA TGCATTGAAA TATGAAATTG ATGGTGTAGT GATTAAGGTT GATAGTATTT CTTTGCAAGA GCAACTAGGC TTTGTTGCAA GAGCCCCGCG TTGGGCTATT GCTTATAAAT TTCCTGCTCA AGAAGAACTG ACCGTTTTAA ACGATGTTGA ATTTCAGGTC GGTCGTACTG GGGCAATAAC CCCCGTAGCC AAATTAGAGC CTATTTTTGT TGGCGGGGTG ACGGTGAGTA ATGCGACATT ACACAATGCC GATGAGATTG CTCGCTTAGG GGTTCATATT GGTGATACTG TCATTATTCG TCGTGCTGGT GATGTTATCC CTCAGATTGT ATCAGTCGTA GAAGCTCGTC GTCCTGAAGA CAGTAAGGCG ATTATCTATC CAACAACATG CCCTGCTTGT GATTCTCAAC TGGAACGAAT TGAAGGCGAA GTCGTCACGC GTTGTGTCGC TGGTTTAGTT TGTCCTGCTC AACGTAAAGA AGCGTTAAAA CATTTTGTTT CTCGCAAAGC GCTTGATGTA GATGGCTTGG GAGATAAAGT GGTAGAGCAA CTCGTAGATA AAGAAATGGT GGAGACACCG GCTGATTTAT TTAAACTGTC TGCAGGTGTA TTAACAGTCC TCGATCGTAT GGGACCAAAG TCAGCGCAGA ATGTGGTCAA TGCATTAAAT AAAGCGAAAG AAACGACGTT ATCACGTTTC TTATATTCTT TAGGGATCAG AGAAGTTGGA GAGGCGACTG CGGCTAATTT AGCTCTCCAT TTTCAAACAT TAAATGCAAT AAGTTCCGCC ACATTTGAAC AATTAATTGA AGTCAGTGAT GTTGGCGATA TTGTTGCTAA ACATATACTT GGTTTCTTTA GTGAGCCTCA TAATCAAGCT GTGATTGAAA ATTTACAACT GATGGGCGTT AATTGGCCGG ATATTAAAGC GCTTGATGAA TCGGTTCCTC AGCCACTAGC TGATAAAGTT GTTGTATTAA CAGGAACATT ATACAAACTA AAACGCAATG AAGCTAAAGC GGCACTACAA GAATTAGGCG CTAAAGTTGC TGGTAGTGTA TCGAAGAATA CCGATATTCT TTTTGCTGGA GAAGCAGCCG GTTCAAAATT AGCCAAAGCA GAAGAACTCG GTGTTGAAAT AATGAATGAA GAACAGTTGA TTGAAATATT AAATAATTAA
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Protein sequence | MSIEKTLDEL KKQLNYHAYR YYVEDSPELP DAEYDRMMQQ LLLIEKEHPE FMTVDSPSQR VGGEALGGFT QVQHEIPMLS LDNAFNDNEL DSFEKRINDR LISDSVSLFC CEPKLDGLAV SLLYVDGLLV QAGTRGDGAT GENITENVRT IRCIPLTLQG EGWPTRLEVR GEVFMPKAGF DALNERALKR AEKPFANPRN AAAGSLRQLD SKITATRPLS FYAYSVGIIE GGELEGSHYQ RFVQLKNWGL PMCEETKQCH SLTDVKAYYK DILERRDALK YEIDGVVIKV DSISLQEQLG FVARAPRWAI AYKFPAQEEL TVLNDVEFQV GRTGAITPVA KLEPIFVGGV TVSNATLHNA DEIARLGVHI GDTVIIRRAG DVIPQIVSVV EARRPEDSKA IIYPTTCPAC DSQLERIEGE VVTRCVAGLV CPAQRKEALK HFVSRKALDV DGLGDKVVEQ LVDKEMVETP ADLFKLSAGV LTVLDRMGPK SAQNVVNALN KAKETTLSRF LYSLGIREVG EATAANLALH FQTLNAISSA TFEQLIEVSD VGDIVAKHIL GFFSEPHNQA VIENLQLMGV NWPDIKALDE SVPQPLADKV VVLTGTLYKL KRNEAKAALQ ELGAKVAGSV SKNTDILFAG EAAGSKLAKA EELGVEIMNE EQLIEILNN
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